Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq11541 125 6e-24 seq3091 122 7e-23 seq3089 120 3e-22 seq14708 111 1e-19 seq3088 109 5e-19 seq3090 104 2e-17 >seq11541 Length=746 Score = 125 bits (138), Expect = 6e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||| ||||||| |||||||| | || || ||||| |||| | || || || | Sbjct 151 AAAAATGTAAATTTTCGTTAAAACACTCACTGGCAAAACTATCACCTTAGATGTTGAGCC 210 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | | ||||| | || | ||||| || ||| | ||||||||||| || |||||||| Sbjct 211 CTCAGATACAATTGAAAACGTCAAAGCTAAGATTTAGGACAAGGAGGGCATCCCACCCGA 270 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||| | | || ||||| || || |||||| |||| ||| | || | || || || Sbjct 271 TCAATAGAGACTCATATTCGCTGGAAAACAGCTAGAAGATGGAAGAACATTATCAGACTA 330 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| |||||||||| || |||| ||||| ||| |||| | |||||| Sbjct 331 CAACATCTAAAAAGAATCTACATTACACTTAGTCTTGAGATTAAGAGGAGGT 382 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| | || || |||||||| ||||| || || || | ||| | || || || | | Sbjct 383 ATGTAGATCTTCGTTAAAACATTAACTGGAAAGACCATTACTTTAGATGTTGAGCCATCT 442 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| |||||| |||| ||||| |||||||||||||||||| Sbjct 443 GACACAATTGAAAATGTTAAAGCAAAAATCTAAGATAAGGAAGGTATTCCACCCGATCAA 502 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || ||| || | || ||| | || | || || || ||| Sbjct 503 TAAAGATTGATCTTTGCAGGAAAATAGCTTGAAGATGGAAGAACTTTATCTGACTATAAC 562 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 ||||| || ||||| ||| | |||||||| || ||||| | ||||||| Sbjct 563 ATTCAGAAGGAATCAACCTTGCATTTAGTATTAAGATTGAGAGGAGGTT 611 >seq3091 Length=1223 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||| | ||||| ||||| || ||||||||||| || | || | || || || | Sbjct 150 AAACATGTAGATTTTCGTTAAGACCTTAACCGGTAAGACCATTACATTGGACGTAGAGCC 209 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || ||| | || | |||| || || ||||||||||| ||||| || ||||| Sbjct 210 ATCAGACACCATTGAGAACGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCTCCCGA 269 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||||||| | || || || || ||||| || || || ||| | | ||| |||||||||| Sbjct 270 TCAACAAAGACTCATCTTCGCTGGCAAGCAATTGGAAGATGGCAGAACCCTCTCCGATTA 329 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| | || || || || | ||| |||||||| || | | |||||| Sbjct 330 CAACATCTAGAAGGAGTCTACTCTCCATCTAGTTTTGAGACTTAGAGGAGGT 381 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || |||||||| || || || || |||||||||| || ||| || | Sbjct 610 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCA 669 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || | |||||||| |||||||| ||||||||| Sbjct 670 GACACCATCGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 729 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || || || ||||| | || ||| | || | || ||||| Sbjct 730 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAAT 789 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| || || || | ||||| ||| | ||||| | || || Sbjct 790 ATCCAAAAGGAGTCTACTCTCCATTTGGTTCTCAGATTGAGAGGTGG 836 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| |||| || || || ||||| || || || || |||| ||||| || || | | Sbjct 838 ATGTAAATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGATGTTGAGCCATCT 897 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || |||||||| ||||||||||| |||||||||||| Sbjct 898 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAGGAGGGTATCCCACCCGATCAA 957 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || || || || || ||| | || | ||||| || ||| Sbjct 958 TAAAGATTGATCTTCGCAGGAAAGCAATTGGAAGATGGAAGAACTCTATCCGACTATAAC 1017 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| || || || | ||||| || Sbjct 1018 ATCCAAAAGGAGTCAACTCTCCATTTGGT 1046 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| |||| || ||||| || | || || || || ||||||| || || ||| | | Sbjct 382 ATGTAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGACGTTGAACCATCA 441 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || ||||| ||||| || || |||||||||||| Sbjct 442 GACACTATTGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATCCCACCCGATCAA 501 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || |||||||| ||||| | || ||| | | ||| | ||| |||||| Sbjct 502 CAAAGACTCATCTTTGCCGGAAAACAACTTGAAGATGGCAGAACCTTGAGCGACTACAAC 561 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 || | || || || ||| | || ||||| ||| || Sbjct 562 ATCTAGAAGGAGTCAACCCTCCACTTAGTGTTGAGA 597 >seq3089 Length=958 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| |||| || || || ||||| || || || || |||| ||||| || || | | Sbjct 610 ATGTAAATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGATGTTGAGCCATCT 669 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || |||||||| ||||||||||| |||||||||||| Sbjct 670 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAGGAGGGTATCCCACCCGATCAA 729 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || ||||| | || ||| | || | || || || ||| Sbjct 730 TAAAGATTGATCTTCGCTGGTAAACAACTTGAAGATGGAAGAACATTATCTGACTATAAC 789 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 |||||||| ||||| ||| | |||||||| || ||||| | ||||||| Sbjct 790 ATTCAAAAGGAATCAACCTTGCATTTAGTATTAAGATTGAGAGGAGGTT 838 Score = 104 bits (114), Expect = 2e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||| | ||||| ||||| || ||||||||||| || | || | || || || | Sbjct 150 AAACATGTAGATTTTCGTTAAGACCTTAACCGGTAAGACCATTACATTGGACGTAGAGCC 209 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || ||| | || | |||| || || ||||||||||| || || |||||||| Sbjct 210 ATCAGACACCATTGAGAACGTCAAGGCTAAGATCCAAGACAAGGAAGGCATCCCACCCGA 269 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||||||| | || || |||||||| ||||| | || ||| | | ||| | ||| || Sbjct 270 TCAACAAAGACTCATCTTTGCCGGAAAACAACTTGAAGATGGCAGAACCTTGAGCGACTA 329 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 |||||| | || || || ||| | || ||||| ||| || Sbjct 330 CAACATCTAGAAGGAGTCAACCCTCCACTTAGTGTTGAGA 369 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || |||||||| || || || || |||||||||| || ||| || | Sbjct 382 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCA 441 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || | |||||||| |||||||| ||||||||| Sbjct 442 GACACCATCGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 501 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || || || ||||| | || ||| | || | || ||||| Sbjct 502 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAAT 561 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| || || || | ||||| ||| | ||||| | || || Sbjct 562 ATCCAAAAGGAGTCTACTCTCCATTTGGTTCTCAGATTGAGAGGTGG 608 >seq14708 Length=579 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| | || || |||||||| ||||| || || || | ||| | || || || | | Sbjct 233 ATGTAGATCTTCGTTAAAACATTAACTGGAAAGACCATTACTTTAGATGTTGAGCCATCT 292 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| |||||| |||| ||||| |||||||||||||||||| Sbjct 293 GACACAATTGAAAATGTTAAAGCAAAAATCTAAGATAAGGAAGGTATTCCACCCGATCAA 352 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || ||| || | || ||| | || | || || || ||| Sbjct 353 TAAAGATTGATCTTTGCAGGAAAATAGCTTGAAGATGGAAGAACTTTATCTGACTATAAC 412 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 ||||| || ||||| ||| | |||||||| || ||||| | ||||||| Sbjct 413 ATTCAGAAGGAATCAACCTTGCATTTAGTATTAAGATTGAGAGGAGGTT 461 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| | || || ||||||||| | || || || || | || | || || || | | Sbjct 5 ATGTAGATCTTCGTTAAAACTCTTACTGGAAAGACCATTACCTTGGACGTAGAGCCATCA 64 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| ||| || | ||||| || ||||||||||| |||||| Sbjct 65 GATACCATTGAGAATGTGAAAGCAAAGATCTAGGACAAAGAAGGTATTCCACCTGATCAA 124 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 | | || ||||| || || ||||||||||| ||| | || | || || |||||| Sbjct 125 TAGAGACTCATATTCGCTGGTAAACAGTTAGAAGATGGAAGAACATTATCAGACTACAAC 184 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||||||| || |||| ||||| ||| |||| | |||||| Sbjct 185 ATCTAAAAAGAATCTACATTACACTTAGTCTTGAGATTAAGAGGAGGT 232 >seq3088 Length=519 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||| ||||||| |||||||| | || || ||||| |||| | || || || | Sbjct 152 AAAAATGTAAATTTTCGTTAAAACACTCACTGGCAAAACTATCACCTTAGATGTTGAGCC 211 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | | ||||| | || | | ||| || ||| | ||||| ||||| || |||||||| Sbjct 212 CTCAGATACAATTGAAAACGTGAAAGCTAAGATTTAGGACAAAGAGGGCATCCCACCCGA 271 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||| || | | || ||||| || ||| || | || ||| | || | || || || Sbjct 272 TCAATAAAGATTGATCTTTGCAGGAAAATAGCTTGAAGATGGAAGAACTTTATCTGACTA 331 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 |||||||| || ||||| ||| | |||||||| || ||||| | ||||||| Sbjct 332 TAACATTCAGAAGGAATCAACCTTGCATTTAGTATTAAGATTGAGAGGAGGTT 384 >seq3090 Length=995 Score = 104 bits (114), Expect = 2e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||| | ||||| ||||| || ||||||||||| || | || | || || || | Sbjct 150 AAACATGTAGATTTTCGTTAAGACCTTAACCGGTAAGACCATTACATTGGACGTAGAGCC 209 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || ||| | || | |||| || || ||||||||||| || || |||||||| Sbjct 210 ATCAGACACCATTGAGAACGTCAAGGCTAAGATCCAAGACAAGGAAGGCATCCCACCCGA 269 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||||||| | || || |||||||| ||||| | || ||| | | ||| | ||| || Sbjct 270 TCAACAAAGACTCATCTTTGCCGGAAAACAACTTGAAGATGGCAGAACCTTGAGCGACTA 329 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 |||||| | || || || ||| | || ||||| ||| || Sbjct 330 CAACATCTAGAAGGAGTCAACCCTCCACTTAGTGTTGAGA 369 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || |||||||| || || || || |||||||||| || ||| || | Sbjct 382 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCA 441 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || | |||||||| |||||||| ||||||||| Sbjct 442 GACACCATCGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 501 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || || || ||||| | || ||| | || | || ||||| Sbjct 502 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAAT 561 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| || || || | ||||| ||| | ||||| | || || Sbjct 562 ATCCAAAAGGAGTCTACTCTCCATTTGGTTCTCAGATTGAGAGGTGG 608 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| |||| || || || ||||| || || || || |||| ||||| || || | | Sbjct 610 ATGTAAATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGATGTTGAGCCATCT 669 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || |||||||| ||||||||||| |||||||||||| Sbjct 670 GACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAGGAGGGTATCCCACCCGATCAA 729 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || || || || || ||| | || | ||||| || ||| Sbjct 730 TAAAGATTGATCTTCGCAGGAAAGCAATTGGAAGATGGAAGAACTCTATCCGACTATAAC 789 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| || || || | ||||| || Sbjct 790 ATCCAAAAGGAGTCAACTCTCCATTTGGT 818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419624443133860