Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5111 104 5e-17 seq5122 86.0 1e-11 >seq5111 Length=3890 Score = 104 bits (114), Expect = 5e-17 Identities = 65/70 (93%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 ||| |||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 2243 AGAAAGCCCGTCTAGCTCAGTCGGTAGAGCGCTTGACTCTTAATCAAGTGGTCGTGGGTT 2184 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 2183 CGAGCCCCAC 2174 >seq5122 Length=2290 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/64 (91%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||| Sbjct 171 AGCCCGTCTAGCTCAGT-GGTAGAGCGCTAGACTTTTAATCTAGTGGTCGAGGGTTCGAT 229 Query 142563 CCCC 142566 |||| Sbjct 230 CCCC 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027570203545204