Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3091 120 7e-22 seq3090 120 7e-22 seq3089 109 1e-18 >seq3091 Length=1223 Score = 120 bits (132), Expect = 7e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 288236 TTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATAT 288295 ||||| |||||||| | ||||| || || | ||| | || || |||||||| | Sbjct 1075 TTCATCATTGTCCACCTCTTAGTCTGAGCACCAAATGGAGAGTTGACTCCTTTTGGATGT 1016 Query 288296 TATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTT 288355 ||||||||| || || | ||| ||||| ||||| |||||||||||||||| | | || Sbjct 1015 TATAGTCGGATAGAGTTCTTCCATCTTCCAATTGCTTTCCTGCGAAGATCAATCTTTATT 956 Query 288356 GAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGC 288415 || |||||| || || ||||| || || || || || || || || || | || Sbjct 955 GATCGGGTGGGATACCCTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAG 896 Query 288416 TCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || || || || ||||| ||||| || |||| |||||||||||| || | |||| Sbjct 895 ATGGCTCAACATCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACATT 837 Score = 109 bits (120), Expect = 1e-18 Identities = 168/237 (71%), Gaps = 7/237 (3%) Strand=Plus/Minus Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299 ||||| |||||| | | ||| || || | ||| | || || ||||||||||| || Sbjct 842 TACAT-TCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTA 784 Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359 ||| || || | ||| ||||| | ||||||||| ||||| || || | ||||| Sbjct 783 GTCACTTAGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTG--- 727 Query 288360 ATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCT 288416 ||| ||| || ||||| || |||| ||| || || || |||||||| || | || Sbjct 726 ATCGGGGGGAATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGA 667 Query 288417 CGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| || || || ||||| ||||| || |||| ||| |||||||| || ||||| Sbjct 666 GGGTTCAACATCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 610 >seq3090 Length=995 Score = 120 bits (132), Expect = 7e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 288236 TTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATAT 288295 ||||| |||||||| | ||||| || || | ||| | || || |||||||| | Sbjct 847 TTCATCATTGTCCACCTCTTAGTCTGAGCACCAAATGGAGAGTTGACTCCTTTTGGATGT 788 Query 288296 TATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTT 288355 ||||||||| || || | ||| ||||| ||||| |||||||||||||||| | | || Sbjct 787 TATAGTCGGATAGAGTTCTTCCATCTTCCAATTGCTTTCCTGCGAAGATCAATCTTTATT 728 Query 288356 GAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGC 288415 || |||||| || || ||||| || || || || || || || || || | || Sbjct 727 GATCGGGTGGGATACCCTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAG 668 Query 288416 TCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || || || || ||||| ||||| || |||| |||||||||||| || | |||| Sbjct 667 ATGGCTCAACATCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACATT 609 Score = 109 bits (120), Expect = 1e-18 Identities = 168/237 (71%), Gaps = 7/237 (3%) Strand=Plus/Minus Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299 ||||| |||||| | | ||| || || | ||| | || || ||||||||||| || Sbjct 614 TACAT-TCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTA 556 Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359 ||| || || | ||| ||||| | ||||||||| ||||| || || | ||||| Sbjct 555 GTCACTTAGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTG--- 499 Query 288360 ATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCT 288416 ||| ||| || ||||| || |||| ||| || || || |||||||| || | || Sbjct 498 ATCGGGGGGAATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGA 439 Query 288417 CGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| || || || ||||| ||||| || |||| ||| |||||||| || ||||| Sbjct 438 GGGTTCAACATCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 >seq3089 Length=958 Score = 109 bits (120), Expect = 1e-18 Identities = 168/237 (71%), Gaps = 7/237 (3%) Strand=Plus/Minus Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299 ||||| |||||| | | ||| || || | ||| | || || ||||||||||| || Sbjct 614 TACAT-TCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTA 556 Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359 ||| || || | ||| ||||| | ||||||||| ||||| || || | ||||| Sbjct 555 GTCACTTAGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTG--- 499 Query 288360 ATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCT 288416 ||| ||| || ||||| || |||| ||| || || || |||||||| || | || Sbjct 498 ATCGGGGGGAATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGA 439 Query 288417 CGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| || || || ||||| ||||| || |||| ||| |||||||| || ||||| Sbjct 438 GGGTTCAACATCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 Score = 91.5 bits (100), Expect = 3e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || |||||||| | | || | ||| ||||| | |||||| || ||||| Sbjct 801 TTCCTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCAAGTTGTTTACCAGCGAA 742 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | | |||| |||||| || || ||||| || || || || || || || Sbjct 741 GATCAATCTTTATTGATCGGGTGGGATACCCTCCTTATCTTGAATCTTGGCCTTGACATT 682 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || | || || || || ||||| ||||| || |||| ||||||||| Sbjct 681 CTCAATGGTGTCAGATGGCTCAACATCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGAC 622 Query 288462 GAATATCTGCATT 288474 ||| || | |||| Sbjct 621 GAAGATTTACATT 609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179348425665432