Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq11541 96.9 4e-15 seq3089 84.2 2e-11 seq13099 82.4 8e-11 seq7039 82.4 8e-11 >seq11541 Length=746 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||||||| | ||| || || || ||||| || |||| || ||||| || | Sbjct 382 ACCTCCTCTTAATCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAGTCTGA 323 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 | || | | || |||||||| || |||||||||||||||| || || |||| ||| Sbjct 322 TAATGTTCTTCCATCTTCTAGCTGTTTTCCAGCGAATATGAGTCTCTATTGATCGGGTGG 263 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||||||| || || ||||| | | | || || | || || Sbjct 262 GATGCCCTCCTTGTCCTAAATCTTAGCTTTGACGTTTTCAATTGTATCTGAGGGCTCAAC 203 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||| | ||||| |||||||| || || || || || || |||| |||||| Sbjct 202 ATCTAAGGTGATAGTTTTGCCAGTGAGTGTTTTAACGAAAATTTACATTTT 152 >seq3089 Length=958 Score = 84.2 bits (92), Expect = 2e-11 Identities = 168/245 (69%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 41967 ATATTAATTTA-TCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTG 42025 ||||| | ||| || ||||||||| || | || || |||||||| || |||||||| Sbjct 852 ATATTTAGTTACTCAACCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTTTG 793 Query 42026 AATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCG 42085 ||| || || |||| | || | | || || || || ||||||||||| || | || Sbjct 792 AATGTTATAGTCAGATAATGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAGATCAATCT 733 Query 42086 CTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCG 42144 | || |||| ||| | | |||||| | | ||| | || | |||| || | | | Sbjct 732 TTATTGATCGGGTGGGATACCCTCCTTAT-CTTGAATCTTGGCCTTGACATTCTCAATGG 674 Query 42145 TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTT 42204 |||| | || ||||| | |||||||| ||||| || | ||||| || ||||||| Sbjct 673 TGTCAGATGGCTCAACATCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTT 614 Query 42205 GCATT 42209 |||| Sbjct 613 ACATT 609 >seq13099 Length=503 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| |||||| | | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 115 AAAAAAAATCTCCTTGACCGGGAATTGAACCCGGGTCTCCCGCGTGACAGGCGGGGATAC 174 Query 57058 TCACCACTATACTACCGAGGATT 57080 | |||||||||||| | |||||| Sbjct 175 TTACCACTATACTATCAAGGATT 197 >seq7039 Length=7881 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 |||||| | | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 97 TCTCCTTGACCGGGAATTGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 156 Query 57066 ATACTACCGAGGATT 57080 |||||| | |||||| Sbjct 157 ATACTATCAAGGATT 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543075340000960