Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq14708 123 2e-23 seq3091 123 2e-23 seq3090 123 2e-23 seq3089 123 2e-23 seq16625 82.4 5e-11 >seq14708 Length=579 Score = 123 bits (136), Expect = 2e-23 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| || ||||| || | ||||| ||||||| |||||||| || || Sbjct 231 CCTCCTCTTAATCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAGTC--TG 174 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | |||||||| ||||| |||||| |||| | | || ||| || || Sbjct 173 ATAATGTTCTTCCATCTTCTAACTGTTTACCAGCGAATATGAGTCTCTATTGATCAGGTG 114 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 |||| ||||| ||||| | || |||||||| ||| | || || ||||| ||| Sbjct 113 GAATACCTTCTTTGTCCTAGATCTTTGCTTTC-ACATTCTCAATGGTATCTGATGGCTCT 55 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| ||||||||||| || || || |||||||| || || || | ||| Sbjct 54 ACGTCCAAGGTAATGGTCTTTCCAGTAAGAGTTTTAACGAAGATCTACAT 5 >seq3091 Length=1223 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| | ||| ||||| || ||||| || ||||| || ||||| || || Sbjct 836 CCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTT 777 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| | |||||| |||||| | || | | ||||| ||| ||| Sbjct 776 AGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGA 717 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| | || ||| || || |||| || || || ||| || Sbjct 716 ATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACA 657 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || ||||| || || |||| |||||| || || ||||||||| Sbjct 656 TCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCATA 609 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| | ||| ||||||| ||| || ||||| || || | |||||||||||| | Sbjct 380 CCTCCTCTAAGTCTCAAAACTAGATGGAGAGTAGACTCCTTCTAGATGTTGTAATCGGAG 321 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| ||||| ||||||||| | || | | ||||| ||| || Sbjct 320 AGGGTTCTGCCATCTTCCAATTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGAGGG 261 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || || || || | || || || || |||||| Sbjct 260 ATACCTTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGTCTGATGGCTCTACG 201 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || || |||||||| ||||| || | || || || ||||| | ||| ||| Sbjct 200 TCCAATGTAATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACATGTTT 150 >seq3090 Length=995 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| | ||| ||||| || ||||| || ||||| || ||||| || || Sbjct 608 CCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTT 549 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| | |||||| |||||| | || | | ||||| ||| ||| Sbjct 548 AGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGA 489 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| | || ||| || || |||| || || || ||| || Sbjct 488 ATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACA 429 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || ||||| || || |||| |||||| || || ||||||||| Sbjct 428 TCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCATA 381 >seq3089 Length=958 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| | ||| ||||| || ||||| || ||||| || ||||| || || Sbjct 608 CCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTT 549 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | ||||| | |||||| |||||| | || | | ||||| ||| ||| Sbjct 548 AGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGA 489 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| | || ||| || || |||| || || || ||| || Sbjct 488 ATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACA 429 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || ||||| || || |||| |||||| || || ||||||||| Sbjct 428 TCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCATA 381 >seq16625 Length=1685 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/236 (68%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 14943 ATGTCTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTA 15002 || || ||| |||| | |||||||| |||||||| || |||||||| || || || Sbjct 803 ATATCCGCCCCCTCTTAGCCTTAAAACCAAATGAAGAGTGCTTTCTTTTTGAATATTATA 862 Query 15003 ATCGCTGAG--AATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGG 15060 ||| ||| |||| |||| |||| ||| ||||| |||||| |||| || Sbjct 863 ATCTGAGAGTGAATTTAATAATCTT--AATTATTTCCCAGCAAATATCATTCGCTATTAA 920 Query 15061 TCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTA 15120 || ||| || ||||| || || | | || |||||| | | ||| || | Sbjct 921 TCTGGTGGTATGCCTTCTTTATCCTAGACTTAATATTTTACTTCTCCAATATAATTTGAA 980 Query 15121 TTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||||||| || | |||||||| || ||||| |||| |||||| ||||| Sbjct 981 GGTTCTACGTCTAAAGTTACTGTTTTACCAGTGAGAGTCTTTAAAAAAATCTGCAT 1036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357303822905540