Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3091 132 1e-25 seq3090 132 1e-25 seq3089 132 1e-25 seq14708 109 1e-18 seq11541 105 2e-17 seq3088 95.1 3e-14 >seq3091 Length=1223 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | |||||||| ||||||||||||| ||||||||| | ||| ||||| Sbjct 825 TCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTTCC 766 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| || || ||||| ||||| ||||| | || || || || ||| ||||| Sbjct 765 ATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTT 706 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 |||| ||||| ||| ||| ||||| |||||||| | ||| ||||| | ||||| Sbjct 705 GTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTGAT 646 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || | |||||| || || ||||| Sbjct 645 GGTCTTTCCAGTCAAAGTTTTGACGAAGATTTG 613 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||||| || || |||||||| |||||||| | || |||||| || | | || Sbjct 375 TCTAAGTCTCAAAACTAGATGGAGAGTAGACTCCTTCTAGATGTTGTAATCGGAGAGGGT 316 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||||||| ||||| || ||||||||||| | || || || ||| || || Sbjct 315 TCTGCCATCTTCCAATTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGAGGGATACC 256 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| ||| ||| || | |||||||| || ||||| ||||| Sbjct 255 TTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGTCTGATGGCTCTACGTCCAA 196 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 || || |||||||| || | || || || ||||| Sbjct 195 TGTAATGGTCTTACCGGTTAAGGTCTTAACGAAAAT 160 Score = 102 bits (112), Expect = 2e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| |||||||| || ||||| ||||||||||| || || | ||||||||||| Sbjct 275 AAAGACTCATCTTCGCTGGCAAGCAATTGGAAGATGGCAGAACCCTCTCCGATTACAACA 334 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 || |||| ||||||||||| || || |||||||||||| || Sbjct 335 TCTAGAAGGAGTCTACTCTCCATCTAGTTTTGAGACTTAGA 375 Score = 102 bits (112), Expect = 2e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| || || | |||||||| ||||||||||||| ||| ||||| | | ||| ||| Sbjct 1055 AGTCTGAGCACCAAATGGAGAGTTGACTCCTTTTGGATGTTATAGTCGGATAGAGTTCTT 996 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||||| |||||||| |||||||| | | | || || || || || || Sbjct 995 CCATCTTCCAATTGCTTTCCTGCGAAGATCAATCTTTATTGATCGGGTGGGATACCCTCC 936 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || |||||||| ||| || || | |||||| | || || ||||| | ||| Sbjct 935 TTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAACATCAAGGGTG 876 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTT 199625 || ||||| || || | ||| || || || |||| Sbjct 875 ATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTT 842 >seq3090 Length=995 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | |||||||| ||||||||||||| ||||||||| | ||| ||||| Sbjct 597 TCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTTCC 538 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| || || ||||| ||||| ||||| | || || || || ||| ||||| Sbjct 537 ATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTT 478 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 |||| ||||| ||| ||| ||||| |||||||| | ||| ||||| | ||||| Sbjct 477 GTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTGAT 418 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || | |||||| || || ||||| Sbjct 417 GGTCTTTCCAGTCAAAGTTTTGACGAAGATTTG 385 Score = 102 bits (112), Expect = 2e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| || || | |||||||| ||||||||||||| ||| ||||| | | ||| ||| Sbjct 827 AGTCTGAGCACCAAATGGAGAGTTGACTCCTTTTGGATGTTATAGTCGGATAGAGTTCTT 768 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||||| |||||||| |||||||| | | | || || || || || || Sbjct 767 CCATCTTCCAATTGCTTTCCTGCGAAGATCAATCTTTATTGATCGGGTGGGATACCCTCC 708 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || |||||||| ||| || || | |||||| | || || ||||| | ||| Sbjct 707 TTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAACATCAAGGGTG 648 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTT 199625 || ||||| || || | ||| || || || |||| Sbjct 647 ATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTT 614 >seq3089 Length=958 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | |||||||| ||||||||||||| ||||||||| | ||| ||||| Sbjct 597 TCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTTCC 538 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| || || ||||| ||||| ||||| | || || || || ||| ||||| Sbjct 537 ATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTT 478 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 |||| ||||| ||| ||| ||||| |||||||| | ||| ||||| | ||||| Sbjct 477 GTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTGAT 418 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || | |||||| || || ||||| Sbjct 417 GGTCTTTCCAGTCAAAGTTTTGACGAAGATTTG 385 >seq14708 Length=579 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | ||| | || || || |||| || ||||||||| | || || ||||| Sbjct 220 TCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAGTCTGATAATGTTCTTCC 161 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | ||| || || ||||| ||||| | || || || || ||| |||||| Sbjct 160 ATCTTCTAACTGTTTACCAGCGAATATGAGTCTCTATTGATCAGGTGGAATACCTTCTTT 101 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 |||| |||||| ||||| || | ||| |||| || ||||| ||||| || || Sbjct 100 GTCCTAGATCTTTGCTTTCACATTCTCAATGGTATCTGATGGCTCTACGTCCAAGGTAAT 41 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 ||||| || || |||||||| || || || Sbjct 40 GGTCTTTCCAGTAAGAGTTTTAACGAAGAT 11 >seq11541 Length=746 Score = 105 bits (116), Expect = 2e-17 Identities = 157/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | ||| | || || || |||| || ||||||||| | || || ||||| Sbjct 370 TCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAGTCTGATAATGTTCTTCC 311 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| ||||| ||||| ||||| ||||| | || || || || || || || Sbjct 310 ATCTTCTAGCTGTTTTCCAGCGAATATGAGTCTCTATTGATCGGGTGGGATGCCCTCCTT 251 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 |||| |||||| || ||| ||| | || |||| | || ||||| || ||||| Sbjct 250 GTCCTAAATCTTAGCTTTGACGTTTTCAATTGTATCTGAGGGCTCAACATCTAAGGTGAT 191 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || ||||| ||||| || |||||| |||||||| Sbjct 190 AGTTTTGCCAGTGAGTGTTTTAACGAAAATT---TACATTTT 152 >seq3088 Length=519 Score = 95.1 bits (104), Expect = 3e-14 Identities = 143/203 (70%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || ||||| || | ||| ||||||| ||||| ||||||||||| |||| ||||| Sbjct 352 GTTGATTCCTTCTGAATGTTATAGTCAGATAAAGTTCTTCCATCTTCAAGCTATTTTCCT 293 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| | | | || || || || || ||| |||| |||||| ||| Sbjct 292 GCAAAGATCAATCTTTATTGATCGGGTGGGATGCCCTCTTTGTCCTAAATCTTAGCTTTC 233 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| ||| | || |||| | || ||||| || ||||| || || || ||||| ||| Sbjct 232 ACGTTTTCAATTGTATCTGAGGGCTCAACATCTAAGGTGATAGTTTTGCCAGTGAGTGTT 173 Query 199613 TTCACAAAAATTTGGTACATTTT 199635 || || |||||| |||||||| Sbjct 172 TTAACGAAAATT---TACATTTT 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178615815736348