Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq11541 95.1 1e-14 seq3091 95.1 1e-14 seq3090 95.1 1e-14 seq3089 95.1 1e-14 >seq11541 Length=746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||||||| | ||| || | || |||||| || |||| ||| |||||||| ||| Sbjct 381 CCTCCTCTTAATCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAGTCTGAT 322 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || | | || || ||||| || || |||||||| | | || || |||| || Sbjct 321 AATGTTCTTCCATCTTCTAGCTGTTTTCCAGCGAATATGAGTCTCTATTGATCGGGTGGG 262 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||||| ||||| |||| | | | || || | || ||| Sbjct 261 ATGCCCTCCTTGTCCTAAATCTTAGCTTTGACGTTTTCAATTGTATCTGAGGGCTCAACA 202 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | ||||| |||||||| || || |||||||| || |||| |||||| Sbjct 201 TCTAAGGTGATAGTTTTGCCAGTGAGTGTTTTAACGAAAATTTACATTTT 152 >seq3091 Length=1223 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| || | | |||| ||| | ||| ||||||||||||||||||||| | Sbjct 836 CCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTT 777 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || ||||| || || || ||||| || | | || || |||| || Sbjct 776 AGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGA 717 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| ||||| | | | ||||| | ||| ||| Sbjct 716 ATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACA 657 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| || || |||| ||||| || ||||||||||| Sbjct 656 TCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 610 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 || ||| || ||||||| | | ||||| ||| | || |||||||||||| || | Sbjct 1072 ATCATTGTCCACCTCTTAGTCTGAGCACCAAATGGAGAGTTGACTCCTTTTGGATGTTAT 1013 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478 ||||||||||||| | | || || | ||||| || ||||| ||||| | | || | Sbjct 1012 AGTCGGATAGAGTTCTTCCATCTTCCAATTGCTTTCCTGCGAAGATCAATCTTTATTGAT 953 Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCG 46538 ||| || | | |||||| || ||||| ||||| || | | ||||| | Sbjct 952 CGGGTGGGATACCCTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAGATG 893 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || ||||| | |||||||| ||||| |||| || || || ||||||| |||| Sbjct 892 GCTCAACATCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACATT 837 >seq3090 Length=995 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| || | | |||| ||| | ||| ||||||||||||||||||||| | Sbjct 608 CCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTT 549 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || ||||| || || || ||||| || | | || || |||| || Sbjct 548 AGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGA 489 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| ||||| | | | ||||| | ||| ||| Sbjct 488 ATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACA 429 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| || || |||| ||||| || ||||||||||| Sbjct 428 TCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 || ||| || ||||||| | | ||||| ||| | || |||||||||||| || | Sbjct 844 ATCATTGTCCACCTCTTAGTCTGAGCACCAAATGGAGAGTTGACTCCTTTTGGATGTTAT 785 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478 ||||||||||||| | | || || | ||||| || ||||| ||||| | | || | Sbjct 784 AGTCGGATAGAGTTCTTCCATCTTCCAATTGCTTTCCTGCGAAGATCAATCTTTATTGAT 725 Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCG 46538 ||| || | | |||||| || ||||| ||||| || | | ||||| | Sbjct 724 CGGGTGGGATACCCTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAGATG 665 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || ||||| | |||||||| ||||| |||| || || || ||||||| |||| Sbjct 664 GCTCAACATCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACATT 609 >seq3089 Length=958 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| || | | |||| ||| | ||| ||||||||||||||||||||| | Sbjct 608 CCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTT 549 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || ||||| || || || ||||| || | | || || |||| || Sbjct 548 AGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGA 489 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| ||||| | | | ||||| | ||| ||| Sbjct 488 ATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACA 429 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| || || |||| ||||| || ||||||||||| Sbjct 428 TCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565095366422880