Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3091 116 4e-21 seq3090 116 4e-21 seq3089 116 4e-21 seq11541 104 2e-17 seq3088 87.8 2e-12 >seq3091 Length=1223 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || || |||||||| | || || || || | Sbjct 610 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCA 669 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || ||| ||||| || || |||||| |||| || Sbjct 670 GACACCATCGAAAACG-TCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCA 728 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||||| ||| || ||||| || || || | | || || | |||||||| Sbjct 729 ACAAAGACTCATTTTCGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAA 788 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| | || || |||||||| || | |||||||| || Sbjct 789 TATCCAAAAGGAGTCTACTCTCCATTTGGTTCTCAGATTGAGAGGTGG 836 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||| |||| ||||| || || ||||| ||||| |||||||| ||||||| || | | Sbjct 382 ATGTAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGACGTTGAACCATCA 441 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| || || || || || || |||| || Sbjct 442 GACACTATTGAGAACG-TGAAGGCCAAGATCCAAGATAAGGAAGGCATCCCACCCGATCA 500 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||| | || || ||||| || || || | | ||| | | ||||||||| Sbjct 501 ACAAAGACTCATCTTTGCCGGAAAACAACTTGAAGATGGCAGAACCTTGAGCGACTACAA 560 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| | ||||| | || || || || ||| || | | ||||| || Sbjct 561 CATCTAGAAGGAGTCAACCCTCCACTTAGTGTTGAGACTCAGAGGTGG 608 >seq3090 Length=995 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || || |||||||| | || || || || | Sbjct 382 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCA 441 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || ||| ||||| || || |||||| |||| || Sbjct 442 GACACCATCGAAAACG-TCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCA 500 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||||| ||| || ||||| || || || | | || || | |||||||| Sbjct 501 ACAAAGACTCATTTTCGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAA 560 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| | || || |||||||| || | |||||||| || Sbjct 561 TATCCAAAAGGAGTCTACTCTCCATTTGGTTCTCAGATTGAGAGGTGG 608 >seq3089 Length=958 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || || |||||||| | || || || || | Sbjct 382 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCA 441 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | || ||| ||||| || || |||||| |||| || Sbjct 442 GACACCATCGAAAACG-TCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCA 500 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||||| ||| || ||||| || || || | | || || | |||||||| Sbjct 501 ACAAAGACTCATTTTCGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAA 560 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| | || || |||||||| || | |||||||| || Sbjct 561 TATCCAAAAGGAGTCTACTCTCCATTTGGTTCTCAGATTGAGAGGTGG 608 >seq11541 Length=746 Score = 104 bits (114), Expect = 2e-17 Identities = 166/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||| |||| ||||| ||||| ||||| |||||||| |||||| | || || ||| | Sbjct 151 AAAAATGTAAATTTTCGTTAAAACACTCACTGGCAAAACTATCACCTTAGATGTTGAGCC 210 Query 38300 CACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | | || | | | ||||| | |||| || || ||||| ||||| || || ||| Sbjct 211 CTCAGATACAATTGAAAACG-TCAAAGCTAAGATTTAGGACAAGGAGGGCATCCCACCCG 269 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGA 38416 | ||| || | ||||| | ||| || |||||||| || || | || || ||| || Sbjct 270 ATCAATAGAGACTCATATTCGCTGGAAAACAGCTAGAAGATGGAAGAACATTATCA--GA 327 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| |||| ||| | || | || || || || | || ||||| || Sbjct 328 CTACAACATCTAAAAAGAATCTACATTACACTTAGTCTTGAGATTAAGAGGAGG 381 >seq3088 Length=519 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||| |||| ||||| ||||| ||||| |||||||| |||||| | || || ||| | Sbjct 152 AAAAATGTAAATTTTCGTTAAAACACTCACTGGCAAAACTATCACCTTAGATGTTGAGCC 211 Query 38300 CACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | | || | | | ||||| | |||| || || ||||||||||| || || ||| Sbjct 212 CTCAGATACAATTGAAAACG-TGAAAGCTAAGATTTAGGACAAAGAGGGCATCCCACCCG 270 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | ||| | | | || | || || ||| |||| || || | | || | |||| Sbjct 271 ATCAATAAAGATTGATCTTTGCAGGAAAATAGCTTGAAGATGGAAGAACTTTATCTGACT 330 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 | ||||| || |||||| | || ||||||| || | | |||||||| || Sbjct 331 ATAACATTCAGAAGGAATCAACCTTGCATTTAGTATTAAGATTGAGAGGAGG 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500046231272960