Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4398 295 5e-74 seq6685 120 2e-21 seq5058 104 2e-16 seq17346 98.7 8e-15 seq11755 95.1 9e-14 seq9125 95.1 9e-14 seq6871 87.8 1e-11 >seq4398 Length=2235 Score = 295 bits (326), Expect = 5e-74 Identities = 1008/1552 (65%), Gaps = 33/1552 (2%) Strand=Plus/Minus Query 517179 TCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATT 517238 ||||||| | |||| || || | || || ||| || ||||| || || |||| | Sbjct 1713 TCTCAATGTCCTCTTTTGACAAACGACCCTTATCATTGGTGATAGTGATCTTGTTGGTCT 1654 Query 517239 TGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATG 517298 | || || ||| | || | |||||| | ||||| |||||||| | ||| || | Sbjct 1653 TTCCGGTGCCCTTGTCAACAGCTGACACATTCAAGATACCGTTGGCATCAATATCGAAGG 1594 Query 517299 TGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTC 517358 |||||||||| | ||||| ||||| | || |||||||| || ||||| || ||| | | Sbjct 1593 TGACTTCAATCTATGGGACGCCTCTTGGTGCGGGTGGGATACCCTCCAAGTTGAATTTGC 1534 Query 517359 CCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTA 517418 | || || || || || || |||| || ||||| || || | ||| || || Sbjct 1533 CGAGGAGATGGTTGTCCTTGGTCAATTGTCTCTCACCTTCAAATACTTGAATGAGCACGC 1474 Query 517419 CAGTTTGATTATCTGAATAAGTTGTAAATACTCT-GGATTTTTTACAAGGAATTGTTGTG 517477 | | || ||||| | |||||| || || | ||| || || || ||||| || ||| Sbjct 1473 CTGGTTAGTTATCAGCATAAGTGGTGAAGA-TCTATGACTTCTTGGTTGGAATGGTGGTG 1415 Query 517478 TTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGA 517537 ||||| ||| | ||||||||| | ||| || || || || | ||| || || || ||| Sbjct 1414 TTTCTTGGAATGAGATTGGTCATCACACCGCCAGCAGTCTCGATACCGAGCGATAGTGGA 1355 Query 517538 GTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCT 517597 | ||||| | | | | || | | |||| |||| | ||| | || || Sbjct 1354 GCAACATCCAACAATAAGAGATCCTTCACGTTTTGATCACCCTCGCCAGTTAAGATGGCA 1295 Query 517598 GCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT 517657 ||||| | |||||||| ||||| ||||| ||||| ||||| | | | ||| | || Sbjct 1294 GCTTGGACTGCAGCACCGTATGCGACAGCCTCATCTGGATTGATTGATCTATTCAATTGC 1235 Query 517658 TTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCC 517716 || |||||||| || | | || | |||| | ||||| |||||||| | ||| || || Sbjct 1234 TTGCCATTGAAGAAGTCTTGGAGCA-TTGTTTGAACCTTGGGAATACGGGTTGAACCACC 1176 Query 517717 AACTAATACAATTTCATGCACCTGTGA----TTTATCCAGTTTTGAATCCAATAAAACTT 517772 || | ||||| ||| || | | ||| || || || ||| ||| || || | Sbjct 1175 GACGAGTACAACTTCGTGAA--TTTGACCCTTTGAT--AGACCTGAGTCCTTCAATACGT 1120 Query 517773 TTTCAAC-GGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCT 517831 |||| || ||| || | | | ||| || | || |||||||| ||||| |||||| Sbjct 1119 TTTCTACTGGGGGCATG-CACTTTCTGAAGAGATCCATGCAAAGTTCCTCGAACTTAGCT 1061 Query 517832 CTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTT 517891 || | || | || | || ||||| ||| | || |||||| | | | Sbjct 1060 CTTGAAATTTAGGTGTTGAAGTCCTCACCTTCAGCCAAGGTCTCGCATTCAATGGGTGCT 1001 Query 517892 TGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTC----- 517946 ||||| | || || || ||| || || || ||| || |||| ||||| Sbjct 1000 TGAGTGGCAGCGGAGAGAATACGCTTTGCCTTCTCGCATTGAGTTCTTAATCTTCTGGTT 941 Query 517947 GTAAGGCTTTTGCTGATTGATTCAA-ATCTGTTTTATATTTTCTCTTGAAATCTTCAACA 518005 | | | |||| | | |||| | || || | ||||||| || | Sbjct 940 GCACGAGCATTGCCGGTAATGTCAATGCCAGTCTTCT------TCTTGAATTCGCTCATG 887 Query 518006 CACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTA 518065 || | || | | || || || || ||||| ||||| | ||| | ||| || Sbjct 886 CAGAAATCGACTAATCTGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTGTCCATTTGTG 827 Query 518066 GCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCA 518125 || | |||| || | || || || | || ||| || | |||||| ||| |||||| Sbjct 826 GCCTTCACTTCAAAGATACCCTCCTCGATAGTCAATAGGGATACATCGAAGGTACCACCA 767 Query 518126 CCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT-TTATCAAGACCATACGC 518184 || | ||||||||| || |||||| | || || | || ||| || || | ||| || || Sbjct 766 CCTAAATCAAAAATGAGCACATTCTTCTC-TTATGATGATTTCTTGTCTAAACCGTAGGC 708 Query 518185 AAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCC 518244 || || ||||| || || |||||||| || | | ||| || | ||||| ||| | || Sbjct 707 AATTGCGGCAGCTGTGGGCTCATTAATGATACGGAGAACGTTCATACCAGAAATGGTACC 648 Query 518245 TGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 ||||| ||||| |||||||| | ||| || || ||||| || || ||||| ||||| || Sbjct 647 AGCATCCTTAGTAGCTTGTCTCTATGAGTCATTGAAATAAGCGGGCACAGTGATAACAGC 588 Query 518305 ATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCAT-TTTACTTAAAATCA 518363 || | | | || || ||| || || ||| ||||| ||||| || | || Sbjct 587 ATTTTTAATTGGCTTGGAAAGATATGCCTCAGCAATTTCCTTCATCTTTAC-TAGGACCA 529 Query 518364 TTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAAT 518423 | || || |||| || | | | | ||| || ||| | || || | | | Sbjct 528 TGGAGGAGATTTCCTCAGCCTAGAACTTCTTCGACTCACCCTTGTACTGCACAACGATAA 469 Query 518424 ATGGTTTATTACC--AACATTAAT-AACTTTAAATGGCCAGTATTTCATATCTGATTGAA 518480 ||| || | || || | | ||| || |||||||||| || | || ||| | Sbjct 468 CTGGCTTGTCTCCTGCACCTGCCTCAACCTTGAATGGCCAGTGCTTTAAGTCCTCTTGTA 409 Query 518481 CACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTG 518540 | | ||| | || | |||||| || |||| ||||||||| | | ||| || | | Sbjct 408 CTTGCTTCTCAGTGAATTTTCTACCGATCAATCTCTTTGCATCATAGACAGTGTTCTTGG 349 Query 518541 GATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATG 518600 | || ||||| |||||| || || ||||| || || ||| | || || || |||| Sbjct 348 GGTTTCTTGCAACTTGATTCTTAGCGGCATCACCGATTAGACGCTCCTCTTCAGTGAATG 289 Query 518601 AAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCAT 518660 |||||||||||| || ||| |||||||||||||| | |||||||| |||||| ||| Sbjct 288 CAACATATGATGGTGTGGTGTTGTTACCTTGATCATTTGGGATAATTTCTACTTTATCAT 229 Query 518661 TTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 ||| |||||||||||| || | ||||| |||||||| || || || || Sbjct 228 TTTACCATACACCTACGCATGAGTAGGTTGTACCTAAATCGATTCCGATTGC 177 >seq6685 Length=2124 Score = 120 bits (132), Expect = 2e-21 Identities = 365/554 (66%), Gaps = 19/554 (3%) Strand=Plus/Plus Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 ||| |||| || || |||| || ||||| |||||||||||||||| | || | Sbjct 1370 TTTGTCAAACCCGTATGCAATTGCTGCAGCTGTTGGTTCATTAATAAAATGAAGTACTTC 1429 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 |||||||||| | |||||| |||||||||| || | |||||| | ||||| | Sbjct 1430 TAGACCAGCAAGCATGGCTGCATTCTTAGTGGCTTACCTCTATGAATCATCGAAATAAGT 1489 Query 518287 AGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCT-TGCCGTTTGTT 518345 || |||||||| || |||| | |||||||| ||||||| | | || || | | | Sbjct 1490 TGGCACAGTAATGACTGCATATCTCACTTCTTTGCCAATAT-ATCTCTCAGCATTCTCCT 1548 Query 518346 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG-----GGAATATTGCTTGGATTC 518400 | | || ||| | ||| | || ||||| |||||| ||| ||| ||| ||| Sbjct 1549 TTAACGTAATTATTAACATAGCTGTAATTTCTTCTGGAGATAGGATAATTTCTT--TTTC 1606 Query 518401 ATTTTGATATGATACTTC-AAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCC 518459 ||||||| || || ||| || ||| ||| | || || || | | | | ||| Sbjct 1607 ATTTTGA-ATTTTAATTCTAATATAAGGTCTCCCTCCTTTGTTTATTATATCATAAGGCA 1665 Query 518460 AGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 518519 | || || | || |||||| || |||| || ||| | ||||||| || ||| Sbjct 1666 ACTAATTTAGGGCTCTTTGAACCTCTTTATCATCGAATTCTTTCCCAATTAGTCTTTTGA 1725 Query 518520 CATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579 |||||| || || || |||| | ||| ||||||| || || || |||| || Sbjct 1726 AATCAAAGATTGTGTTCTTTGGCCTTATTATTGCTTGATTCTTAGCAATCTCACCAA-CA 1784 Query 518580 GATGTTCTGTCTCT-GTAAATGAAACATATGATGGAGTTGTGCGATTACC---TTGATCA 518635 | || || || ||||| | | ||||||||||| | | | |||||| || |||| Sbjct 1785 TGTACTCCTTCACTGGTAAACAATAGATATGATGGAGATATTCTATTACCGAATTTATCA 1844 Query 518636 TTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCT 518695 | |||| |||| ||| | || | || ||| ||| || || | | | ||||| Sbjct 1845 ---GGAATATTTTCTACTCTGCCTTATTTGTATATACCCACGGAAGAATATTTAGTTCCC 1901 Query 518696 AAATCAATACCAAT 518709 ||||||||||| || Sbjct 1902 AAATCAATACCTAT 1915 >seq5058 Length=2201 Score = 104 bits (114), Expect = 2e-16 Identities = 192/281 (68%), Gaps = 3/281 (1%) Strand=Plus/Minus Query 518026 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 518085 ||| || || || || ||||| | ||||| ||| ||||| || | || | || Sbjct 907 ATCGAAGTCCTCTCCACCCAAGTGAGTATCTCCACTGGTAGCAACGACCTCAAATACACC 848 Query 518086 ATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 518145 || || | | ||| | | |||||| ||| |||||||||| ||||| | | | Sbjct 847 ATTATCGATGGTCAATAATGATACATCGAAGGTACCACCACCCAAGTCAAACACGATAAT 788 Query 518146 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 518205 ||| | || |||| || || || | || || |||| ||||||||| || || || Sbjct 787 GTTCTTCTCAC---CTTGCTTCTTGTCCATGCCGTAGGCAATAGCAGCAGCGGTGGGCTC 731 Query 518206 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 518265 ||| ||||| | ||||| | ||||||||||| || ||||| |||||||| | || Sbjct 730 ATTGATAATACGTAAAACGTCGAGACCAGCAATGAGGCCAGCATCCTTAGTGGCCTACCT 671 Query 518266 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || |||||| || ||||| || || || ||||| || |||| Sbjct 670 TTATGAATCATTGAAATAAGCTGGGACGGTAATGACTGCAT 630 >seq17346 Length=8683 Score = 98.7 bits (108), Expect = 8e-15 Identities = 240/361 (66%), Gaps = 2/361 (1%) Strand=Plus/Minus Query 303738 TCCACCATCTCTTGATCTACCTTCTGGCGCTTGTCTTGTAAGTAACTGTGTTGGTCCACG 303797 |||||||||||||||||| ||||| | | || ||| || | | || || || || | Sbjct 6847 TCCACCATCTCTTGATCTTCCTTCAGTAGGTTATCTAGTCAAGATTTGAGTAGGACCTCT 6788 Query 303798 AGCGCGTGAGTGGGCCTTGTCGCCTACCATTTGTTTCAATCTCTGATAATATGTCGGACC 303857 | || || || ||||| ||||| || || | ||||| ||| | || || || Sbjct 6787 GCCACGAGAATGAATTTTGTCATTGACCATATGCTTTAGTCTCTAATAGAAAGTGGGCCC 6728 Query 303858 AATAAAAATTTTAACTGGTAATTTTTTACCATTCATTCCATTATACATAGTTTCATTACC 303917 || || || ||||| |||| |||||| | | |||||||||||| |||||| || Sbjct 6727 AAAGAATATCATAACTTCCTATTTCTTACCAGTAAATCCATTATACATTACTTCATTTCC 6668 Query 303918 CCATTCTTCATAACCAGCAGCAACTAATTCATCGTTAATGGCATTAAGATCAACACTTGT 303977 || || |||||| | | | ||||| |||| ||| || || | | Sbjct 6667 ATATCTTTAATAACCTAATGAATGAAGTTCATTTGAAATGTCATCAACATTTTGTCCTTA 6608 Query 303978 AAATGGTGTTGCATCGCCATACAC-TCCTTTAACTGCACATAGTTTTCCTAATAAACATT 304036 ||||||||||||||| || | ||| ||| |||| | | || ||| || ||| || | Sbjct 6607 AAATGGTGTTGCATCACC-TTCACTTCCATTAAAGGAAGCTACTTTAGATAGTAAGCACT 6549 Query 304037 CAATAAGTTGCCCAATAGTCATACGTTTGGGCATACAATTAGGATTGATAATAATATCGG 304096 |||| | || ||||||||||| || || ||| || |||||| | ||| || || | Sbjct 6548 CAATTAAATGACCAATAGTCATTCGAGAAGGAATAGCATGAGGATTAACAATCATGTCAG 6489 Query 304097 G 304097 | Sbjct 6488 G 6488 >seq11755 Length=1720 Score = 95.1 bits (104), Expect = 9e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 1047811 TACGAAAATTTTGGATACGTTTCTAATTCAATGATTCTTGTTATTATTTTACAATTGATA 1047870 |||||| | | || ||||| ||||||| ||| | | || | ||| || ||| ||| | Sbjct 956 TACGAAGAGATCGGGTACGTAACTAATTCTATGGTGTTAGTGAATATATTCCAAATGACA 1015 Query 1047871 TATATTGTTGAttttttttATAATGAAAATTGGTATGTTCACACTGTAGATATTGCTCAT 1047930 ||| | || || || ||||||||||| |||||||| | ||| |||| ||||||||| Sbjct 1016 TATGTAGTAGACTTCTTTTATAATGAGGATTGGTATTTAAGGACTATAGACATTGCTCAT 1075 Query 1047931 GATCATTTTGGATGG 1047945 ||||||||||| ||| Sbjct 1076 GATCATTTTGGGTGG 1090 >seq9125 Length=2141 Score = 95.1 bits (104), Expect = 9e-14 Identities = 357/551 (65%), Gaps = 13/551 (2%) Strand=Plus/Minus Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 ||| |||| || || |||| || ||||| |||||||||||||||| | | || | Sbjct 767 TTTGTCAAACCCGTATGCAATTGCTGCAGCGGTTGGTTCATTAATAAAGTTAATTACTTC 708 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 |||||||||| | |||||| ||||| |||| || | |||||| | ||||| | Sbjct 707 TAGACCAGCAAGCATGGCTGCATTCTTAGTAGCTTACCTCTATGAATCATCGAAATAAGT 648 Query 518287 AGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTT-TGTT 518345 || |||||||| | |||| | |||||||| || |||| | | || ||| | | Sbjct 647 TGGCACAGTAATGAATGCATATCTCACTTCTTTGCCGATAT-ATCTCTCAGAGTTCTCCT 589 Query 518346 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG-----GGAATATTGCTTGGATTC 518400 | | || ||| | ||| | || || | ||| || || ||| ||| || Sbjct 588 TTAACGTAATTAGTAACATAGCTGTAACATCTTCGGGAGATAGGCTAATTTCTT--TATC 531 Query 518401 ATTTTG-ATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCC 518459 |||||| || ||| | || || ||| ||||| || | || | | | | ||| Sbjct 530 ATTTTGAATTTGA-ATTTTAATATAAGGTTTCCCTCCTTTGCTTATTATATCATAAGGCA 472 Query 518460 AGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 518519 | ||||| | || |||||| |||| || ||| ||||||||| || ||| Sbjct 471 ACTATTTTAGGGCTCTTTGAACCTCCATATCATCGAATTCTTTACCAATTAGTCTTTTAA 412 Query 518520 CATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579 || |||| || || || |||| | ||| ||||||| || || || |||| || Sbjct 411 CACCAAAGATTGTGTTCTTTGGCCTTATTATTGCTTGATTCTTAGCAATCTCACCAA-CA 353 Query 518580 GATGTTCTGTCTCT-GTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTC 518638 | ||| || || |||| | | ||||||||||||| | | ||| || |||| Sbjct 352 TGTATTCCTTCACTGGTAATTAATACATATGATGGAGAGATTCTATTTCCGAATTCATCA 293 Query 518639 GCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAA 518698 | |||| |||| ||| | || | || ||| ||| || || | | || ||||| ||| Sbjct 292 GGAATATTTTCTACTCTGCCTTATTTGTATATACCAACGGAAGAATATGTAGTTCCCAAA 233 Query 518699 TCAATACCAAT 518709 |||||||| || Sbjct 232 TCAATACCTAT 222 >seq6871 Length=5731 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 ||||| || | |||||||||||||| || ||||| || ||| || |||| || || Sbjct 3301 CCGTAAGCGATTGCTGCTGCAGTTGGCTCGTTAATAATACGAAGGACTTCTAGGCCAGCT 3360 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 || || ||| ||| |||||||||||||| || ||||| || || ||||| ||||| Sbjct 3361 ATATTGCCAGCATCTTTAGTTGCTTGTCTCTAGGCATCATTGAAGTAGGCTGGCACAGTG 3420 Query 322364 ATAACTGC 322371 || ||||| Sbjct 3421 ATGACTGC 3428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779817826036264