Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq13015 187 3e-42 >seq13015 Length=2880 Score = 187 bits (206), Expect = 3e-42 Identities = 871/1360 (64%), Gaps = 36/1360 (3%) Strand=Plus/Plus Query 111711 CACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTC 111770 || || || || || | |||||| |||||||||| | || ||||||| |||||| Sbjct 878 CATGCCACTCCTACTTTATTCAACTCTGGTACACCCAAGCCATAAATGTCTTCATGTTTC 937 Query 111771 CTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCC 111830 ||| | | | || || |||||||| | || || |||| ||||| | || ||| Sbjct 938 CTTTTGACTATGAAAGACGATTCAATACAAGGTATCTACGATACTCTTAGACAAACTGCT 997 Query 111831 CAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAG 111890 ||| || |||| |||||||| || || | || ||| | | ||||| || | Sbjct 998 TTAATATCTAAGTCAGCTGGTGGAATTGGACTTTCAATTCATTGTATAAGAGCTT-CAGG 1056 Query 111891 -TCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATT 111949 ||| ||||| ||| || ||||| | || |||| | ||||||||| | || || Sbjct 1057 CTCTTATATTAAAGGCACTAATGGCTACTCTAATGGCTTAATTCCAATGTTAAAGGTTTT 1116 Query 111950 TAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTC---GCAAGGGATCTATCGCAGT 112006 || | || || | ||||| |||||| ||| || | || || || | || | Sbjct 1117 CAATGAAACTGCTAGATATGTTGACCAAGGTGGTGGTAAAAGGAAAGGTTCCTTTGCCAT 1176 Query 112007 CTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGG 112066 ||||| || || ||||| || ||| | | || || ||| | || ||||| || Sbjct 1177 TTATCTAGAACCTTGGCATGCTGATGTTTTCGATTTTCTTATGATGAAGAAGAACCACGG 1236 Query 112067 TGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCAT 112126 | | ||||| | | |||||||| | ||| | ||| | |||||||| || || Sbjct 1237 TAAAGAGGAATAAAGAGCTAGAGATCTCTTTTATGCTTTATGGGTGCCAGATCTATTTAT 1296 Query 112127 GAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCT 112186 ||| ||||| || | ||| ||||| | || || ||||| | |||||||||| | Sbjct 1297 GAATAGAGTGAAGTCTAATGGAGATTGGACACTTTTCTGTCCTAATGAGGCACCCGGCTT 1356 Query 112187 CTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTC- 112245 |||| | || ||||| |||||| || || |||||| ||| ||||| | Sbjct 1357 ACAAGATGTTTTTGGAGAGGAATTTGAAAAGCTTTATGAAAAGTATGAGAAAGAAGGCAA 1416 Query 112246 GGGCGACTGCGACGGTGCCA--GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAAC 112303 |||| | | | | || || | | ||| |||||||| | | |||||| Sbjct 1417 GGGCAAAA---AAGTTATCAAAGCCTAAAAACTTTGGGAAGCTATTATTGAATCTCAACA 1473 Query 112304 CGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAA 112363 || ||||| || ||||| ||||| || ||||| || || || |||| || || | Sbjct 1474 AGAAACTGGCACTCCATACATGCTCTATAAAGATGCGTGCAATAAAAAATCAAACTAATA 1533 Query 112364 GAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAA 112423 | |||| ||| || || |||||||| || ||||| | |||| ||| | Sbjct 1534 GCATTTAGGTACAATAAAATCATCCAACCTTTGCTGTGAAATAGTCGAATACACATCCCC 1593 Query 112424 AGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA 112483 |||||| | ||||| ||||| ||||| ||||| |||| || | |||||| | ||| Sbjct 1594 AGATGAAATTGCTGTTTGTAATCTCGCCTCAATATCTCTTCCTAGATATGTGAACAAAGA 1653 Query 112484 GACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAA---AAAA 112540 | |||| ||||||||||||| |||||| ||||| || ||| | || || Sbjct 1654 ATCGTAGACCTTTGATTATGAAAGACTCCATGAAGT---GACTCGTGTAATAACTCGCAA 1710 Query 112541 CCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATAT 112600 |||||| | |||||| || || ||||| || || || ||||||||| | Sbjct 1711 TTTAAACAAGATCATTGATGTCAACTTCTACCCAGTAGAAGAAGCCGAAAAATCTAATCT 1770 Query 112601 GAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCG 112660 | ||| | || |||||| | ||||| | || || || ||| ||| | || | Sbjct 1771 CCGTCACAGACCTATTGGTATAGGTGTTTAGGGACTAGCTGATACTTTC--TAATTACTG 1828 Query 112661 CCA--CGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATG 112718 | |||||||| || || ||||| || | || | ||||||||||| || Sbjct 1829 AAATTTGCATTTGAATCAGATGAAGCTGCTGATTTGAACAAGAAGATATTTGAGACCATT 1888 Query 112719 TATCACGC--CGCT-CTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAA 112775 ||||| || || | ||||| | | ||| | | || | | || || || |||||| Sbjct 1889 TATCATGCTTCGATGCTTGAATC-AATTC--AACTAGCTAAAGAAGAGGGCCCTTATGAA 1945 Query 112776 ACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTC-AATTTGATATGTGGGAAGGTGA 112834 || || | ||||||||| || || || ||| |||||||| | ||| | | || Sbjct 1946 ACATTCTAAGGTTCTCCA-CTCAGTAAAGGAAAATTCTAATTTGATCTATGGAATGAAGA 2004 Query 112835 GACC--AAGCTTCA--CTACGACTGGGACGCTCTCAAGGAACGCA-TCAAGGAGAAGGGT 112889 ||| | || || || || ||| | | || ||| | | | | | | | | ||| Sbjct 2005 -ACCTTATACTACAAGGTATGATTGGTAAACACT-AAGATAGGAAGTTATGTAACACGGT 2062 Query 112890 CTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGT 112949 |||||| ||| | | || || |||||||| || || || ||||||| || || Sbjct 2063 GCCCGTAACTCTCTCCTAGTTGCTCCTATGCCAACTGCATCAACTTCACAAATATTAGGG 2122 Query 112950 AATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGA 113009 || ||||||| ||||||||||||||| || || |||| ||||| | || || Sbjct 2123 AACAATGAATCCTTTGAACCCTACACCACCAATGTCTACACAAGAAGGGTATTGGCTGGT 2182 Query 113010 GAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCA 113049 |||||||| || ||| ||||| ||| ||||||| Sbjct 2183 GAGTTTGTATGCGTTAACCCACATCTAGTGAGAGACCTCA 2222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620585321135680