Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq6046 143 3e-29 >seq6046 Length=3440 Score = 143 bits (158), Expect = 3e-29 Identities = 574/895 (64%), Gaps = 78/895 (9%) Strand=Plus/Plus Query 159305 AACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCA-- 159362 ||||||| | ||| || | || |||| ||| || || | ||||| || ||||| Sbjct 2171 AACCTAATTCTGGAGCAAATGGAGAGTTTGCTGGCATGATGGCAATAAAATATTACCACG 2230 Query 159363 --TCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGA 159420 |||||| || | | | ||| || | ||| | || |||| ||||| ||||| Sbjct 2231 AGTCAAGG----GGTCAAGGCCACAGAGATATCTGTCTTATTCCAGTTTCAGCTCATGGC 2286 Query 159421 ACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGT-GA-TG 159478 ||||| || || | || |||| || ||||||||||| | ||| || || || || Sbjct 2287 ACTAACCCAGCCACTGCTTCAATGGTTGGAATGAAAGTTGTGGCTGTTAACTGCAGAGTG 2346 Query 159479 ATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAATACATT--TGA 159536 | | || | || || | | ||| || || ||| ||| |||||||| | | | Sbjct 2347 A--ACGGTGATATCGATGTGGAGGATTTAAAGGCGAAGGCA--CATGAATATAAAGATAA 2402 Query 159537 ACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAG 159596 ||| ||||| ||||||||| || ||| ||| ||||||||||||||| | | | Sbjct 2403 ACTTTCATGCGCTATGATTACTTACCCAAGTACTCATGGTGTATTTGAAGGAGGAGTTAA 2462 Query 159597 ACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCT 159656 |||| ||| | |||| ||| | ||||||| || | ||| | |||||||| || | Sbjct 2463 GGAGATTTGTGAAGTTGTACATAAATATGGTGGATAGATCTATTTAGATGGTGCCAACTT 2522 Query 159657 AAATGCACAGGTAGGTCTAGCAAAACCATGTGACTAT-GGTGCAGATGTATGTCATCTAA 159715 |||||||| | || || | |||| | | ||| || || ||||| |||| | | Sbjct 2523 TAATGCACAAATGGGACTTACTTCACCAGGA-ATTATCGGCGCTGATGTTGGTCACTTTA 2581 Query 159716 ACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTG 159775 || ||||||||||||| | ||| || ||||||||||| || ||||| || || | |||| Sbjct 2582 ACCTACATAAGACATTTTCTATACCTCATGGAGGTGGTGGACCTGGAGTTGGAGCCATTG 2641 Query 159776 GTGTAGCAAAA---CATCTCACACCATT------TGTAAAT----------CA------- 159809 || || ||| |||||| ||| || || | || || Sbjct 2642 GT---GCTAAATTCCATCTCTAACCTTTCTTGCCTGGACATATTACTATTCCAGTTGATG 2698 Query 159810 -AAGA------------GTATCAGCAGCAGTACAAGGCAGTGCATCTATCTTACCTATTA 159856 |||| ||||| || ||| | || |||||| ||| ||||||||| Sbjct 2699 GAAGAAAGAGCCATGCTGTATCTGCTGCACCTTATGGTAGTGCAGGTATTTTACCTATTT 2758 Query 159857 GTTGGATG--TATATAAGAATGATGGGTGCTGATGGACTTAAGTATGCAACAGAGGTTGC 159914 || ||| ||||| | |||||||| |||||||| | || | | ||| Sbjct 2759 CTT--ATGCCTATATTAAGATGATGGGAAAGGATGGACTCTTGGCCTCATCTTAACATGC 2816 Query 159915 ACTACTAAATGCTAACTGGTTAGCACATAAGA-TAGAAGATTCATTCAAAGTTTTATACA 159973 |||| |||||||||| ||| | |||| ||| ||| | ||| || | |||| Sbjct 2817 TATACTTAATGCTAACTACTTATGTGA-AAGACTAGCTGATGGTTATAAAATTCTTTACA 2875 Query 159974 AAGGAGAGAATGGTAGGATAGCACACGAGTGTATCTTTGACTGTCG-GAACTTACCA--- 160029 ||||||| | ||||| |||| ||||| | |||| |||| || | ||| | | | Sbjct 2876 GAGGAGAGCAAGGTAGAGTAGCTCACGAATTTATCATTGATTGCAGAGAATTCAAAAAAT 2935 Query 160030 --------GTGACAGCAGAAGATATAGCAAAGAGACTTATGGACTATGGATTCCATGCAC 160081 || || | | ||||||||||||||| || ||||||| ||| ||||| |||| Sbjct 2936 CAGCAGATGTAACTGAATCAGATATAGCAAAGAGGCTAATGGACTTTGGTTTCCACGCAC 2995 Query 160082 CTACACTATCGTGGCCTGTGTTAGGAACTATGATGGTAGAACCAACAGAGTCTGA 160136 | || | || | || || |||| || ||| | || |||||||| || || Sbjct 2996 CAACCATTTCATTCCCCGTAGTAGGTGGCATAATGATTGAGCCAACAGAATCAGA 3050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587902393643840