Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq11541 109 4e-19 seq3088 100 2e-16 seq3089 84.2 1e-11 seq14708 82.4 5e-11 >seq11541 Length=746 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || || ||||| || ||||| | ||| |||||| | ||||| ||||| || Sbjct 381 CCTCCTCTTAATCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAGTCTGAT 322 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | ||| | |||| || ||||||||||| || ||||| |||| | || || | || Sbjct 321 AATGTTCTTCCATCTTCTAGCTGTTTTCCAGCGAATATGAGTCTCTATTGATCGGGTGGG 262 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| |||||| ||||||| | | || | || || ||||||| Sbjct 261 ATGCCCTCCTTGTCCTAAATCTTAGCTTTGACGTTTTCAATTGTATCTGAGGGCTCAACA 202 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | ||| || ||||| || ||||| || || || || || | ||| || Sbjct 201 TCTAAGGTGATAGTTTTGCCAGTGAGTGTTTTAACGAAAATTTACATTTT 152 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| || || || || || | || ||| ||||||||||||||||| || Sbjct 609 CCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTCAGAT 550 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | ||| | |||| || |||| |||||| ||||| || | || || || || | || Sbjct 549 AAAGTTCTTCCATCTTCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGGTGGA 490 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || || || ||| || | | || | ||| | ||||||| Sbjct 489 ATACCTTCCTTATCTTAGATTTTTGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACA 430 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || ||||| ||||| || | || || || ||||||| |||| Sbjct 429 TCTAAAGTAATGGTCTTTCCAGTTAATGTTTTAACGAAGATCTACATA 382 >seq3088 Length=519 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| || || || || || | || ||| ||||||||||||||||| || Sbjct 382 CCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTCAGAT 323 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | ||| | |||| || |||| |||||| ||||| || | || || || || | || Sbjct 322 AAAGTTCTTCCATCTTCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGGTGGG 263 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| ||||| |||||| ||| ||| | | || | || || ||||||| Sbjct 262 ATGCCCTCTTTGTCCTAAATCTTAGCTTTCACGTTTTCAATTGTATCTGAGGGCTCAACA 203 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | ||| || ||||| || ||||| || || || || || | ||| || Sbjct 202 TCTAAGGTGATAGTTTTGCCAGTGAGTGTTTTAACGAAAATTTACATTTT 153 >seq3089 Length=958 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| || || || || || | || ||| || |||||||||||||| || Sbjct 836 CCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTTTGAATGTTATAGTCAGAT 777 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | ||| | |||| || || ||||| || || || || | || || || || | || Sbjct 776 AATGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAGATCAATCTTTATTGATCGGGTGGG 717 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | |||||||| || |||||| ||||| || || || | ||| | ||||| Sbjct 716 ATACCCTCCTTATCTTGAATCTTGGCCTTGAC--ATTCTCAATGGTGTCAGATGGCTCAA 659 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| | ||| ||||| || || || | |||||| || ||||| | ||| Sbjct 658 CATCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACAT 610 >seq14708 Length=579 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| || || || || || | || ||| ||||||||||||||||| || Sbjct 459 CCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTCAGAT 400 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | ||| | |||| || |||| |||||| ||||| || | || || || || | || Sbjct 399 AAAGTTCTTCCATCTTCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGGTGGA 340 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || || || ||| || | | || | ||| | ||||||| Sbjct 339 ATACCTTCCTTATCTTAGATTTTTGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACA 280 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || ||||| ||||| || | || || || ||||||| |||| Sbjct 279 TCTAAAGTAATGGTCTTTCCAGTTAATGTTTTAACGAAGATCTACATA 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324553505180832