Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq13015 343 2e-89 seq12968 277 2e-69 >seq13015 Length=2880 Score = 343 bits (380), Expect = 2e-89 Identities = 852/1293 (66%), Gaps = 22/1293 (2%) Strand=Plus/Minus Query 47515 CATTCCAAAAATCATATTGAAGAATT--CCTTTACTTATCGGAGAACCATTATATGTTTT 47572 ||||||| | |||| ||| |||||| |||||||| | |||||||| | |||||| Sbjct 2000 CATTCCATAGATCAAATT--AGAATTTTCCTTTACTGAGTGGAGAACCTTAGAATGTTTC 1943 Query 47573 ATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCA--AT-GCACTATAATATAT 47629 |||||| || | | |||||| |||| | ||| ||| | || | | || ||| || Sbjct 1942 ATAAGGGCCCTCTTCTTTAGCTAGTTGAA---TTGATTCAAGCATCGAAGCATGATAAAT 1886 Query 47630 TGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNN 47689 || |||||||| || |||| | || ||||| ||||||||| | | | Sbjct 1885 GGTCTCAAATATCTTCTTGTTCAAATCAGCAGCTTCATCTGATTCAAATGCAAATTTCAG 1826 Query 47690 NNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATT 47749 || ||||| || | ||| | |||||| |||||||| ||||| ||| ||| Sbjct 1825 TAATTAGAAAGTATCAGCTAGTCCCTAAACACCTATACCAATAGGTCTGTGACGGAGATT 1766 Query 47750 AGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNN 47809 ||| || |||||| || ||| || ||| | ||| || || || |||| | Sbjct 1765 AGATTTTTCGGCTTCTTCTACTGGGTAGAAGTTGACATCAATGATCTTGTTTAAATTGCG 1706 Query 47810 NNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGT-----TATTTATA 47864 | ||| | | | | | ||||||| | | | ||| | Sbjct 1705 AGTTATTACACGAGTCACTTCATGGAGTCTTTCATAATCAAAGGTCTACGATTCTTTGTT 1646 Query 47865 -ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGT 47923 ||| | ||| ||| | ||| || || |||||||| ||||| | |||| ||| || Sbjct 1645 CACATATCTAGGAAGAGATATTGAGGCGAGATTACAAACAGCAATTTCATCTGGGGATGT 1586 Query 47924 ATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT 47983 |||| | ||||||| || || || |||| || ||||| |||| | | || Sbjct 1585 GTATTCGACTATTTCACAGCAAAGGTTGGATGATTTTATTGTACCTAAATGCTATTAGTT 1526 Query 47984 --ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGA 48041 ||| || || || || || || || ||||| | || || ||||||||| ||| Sbjct 1525 TGATTTT--TTATTGCACGCATCTTTATAGAGCATGTATGGAGTGCCAGTTTCTTGTTGA 1468 Query 48042 GATTCAATGATAGATTTCCAAACAGTCCTAGCCTTT-ATAACAGCTCTAGCTTTATTATC 48100 |||||||| |||| || ||||| | ||| |||| ||||| | | | || || Sbjct 1467 GATTCAATAATAGCTTCCCAAAGTTTT-TAGGCTTTGATAACTTTTTTGCCCTTGCCTTC 1409 Query 48101 ATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGG 48160 | || || || ||| | ||| |||||||| || ||| | |||| | ||| || || Sbjct 1408 TTTCTCATACTTTTCATAAAGCTTTTCAAATTCCTCTCCAAAAACATCTTGTAAGCCGGG 1349 Query 48161 ACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATAT 48220 ||||||||||| | | || |||||| ||| | || |||||| ||||||||| Sbjct 1348 TGCCTCATTAGGACAGAAAAGTGTCCAATCTCCATTAGACTTCACTCTATTCATAAATAG 1289 Query 48221 ATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATT 48280 |||||| | ||| | ||| ||| | ||| |||| |||| ||| || || || || Sbjct 1288 ATCTGGCACCCATAAAGCATAAAAGAGATCTCTAGCTCTTTATTCCTCTTTACCGTGGTT 1229 Query 48281 CCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCAT 48340 | | || | |||||| || | | |||||||||||| ||||||| ||| || || | Sbjct 1228 CTTCTTCATCATAAGAAAATCGAAAACATCAGCATGCCAAGGTTCTAGATAAATGGCAAA 1169 Query 48341 TACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCT 48400 |||| | |||| ||| ||||| || | |||||| ||||| | || |||| | Sbjct 1168 GGAACCTTTCCTTTTACCACCACCTTGGTCAACATATCTAGCAGTTTCATTGAAAACCTT 1109 Query 48401 TAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGC 48460 ||||||||| | | ||||| || ||||| || || ||||||| || ||| Sbjct 1108 TAACATTGGAATTAAGCCATTAGAGTAGCCATTAGTGCCTTTAATATAAGAGCCTGAAGC 1049 Query 48461 TCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCG 48520 ||||||| | |||||||| || || ||||| || |||||||||| |||| | Sbjct 1048 TCTTATACAATGAATTGAAAGTCCAATTCCACCAGCTGACTTAGATATTAAAGCAGTTTG 989 Query 48521 TTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 | |||| ||||| || || |||| ||| ||| ||| ||||| | || || ||||| Sbjct 988 TCTAAGAGTATCGTAGATACCTTGTATTGAATCGTCTTTCATAGTCAAAAGGAAACATGA 929 Query 48581 AGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCA 48640 |||||||| || | || || || || ||||| || |||| |||||| ||||||| Sbjct 928 AGACATTTATGGCTTGGGTGTACCAGAGTTGAATAAAGTAGGAGTGGCATGAGTAAACCA 869 Query 48641 TTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACC 48700 ||| ||||| | || | ||| ||||||||| | | || ||| || || || || Sbjct 868 TTTATCTGACATTAAATGATAAGTTTCAATAGCTCTCTTTACATCATTTTTGTGGATTCC 809 Query 48701 TATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAA 48760 ||| ||||| | ||| ||||| |||||||||| |||||| ||||| || | ||| | Sbjct 808 TATGGATACTCTCATCAACATTTATTGAGGTCGTTCAACGATTTTTCCATGAACTTTGAG 749 Query 48761 AAGATATGATTTTTCCAATGTTTTAAAACCAAA 48793 | ||| || || || || |||||||| ||||| Sbjct 748 TAAATAGGACTTCTCTAAGGTTTTAAAGCCAAA 716 >seq12968 Length=2778 Score = 277 bits (306), Expect = 2e-69 Identities = 601/886 (68%), Gaps = 25/886 (3%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||| |||||| | ||||| || |||||||| || || || || || ||| || | Sbjct 157 TTTTAATATTCCCCGACTCTCTTCTCAAAGAAGTTTGTCTTGCCTGGTAGTGAAATCATT 216 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATA-TAtttttttGAATCCTAATTCTAATAG 18788 ||||| | |||||||||||| ||||| || || || | | |||||| | || || Sbjct 217 TCCATCCACTCAAATGGATTTAACACATTGTAGTACTTAGGT-ACTCCTAAAGCAAAGAG 275 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 ||||||||| || ||||||| |||||| ||| | | | ||||||| || || | Sbjct 276 TAGTCTATCAGCCACAAATTATATATATTGAGCCATTAAGTTAGAATTCATACCAATAAG 335 Query 18849 TTTAACAGGTAGTGCATCTGTA-AGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 || ||| || || || | | | | ||| ||| ||| || | ||| || | ||| |||| Sbjct 336 TTCAACTGGGAGAGC-TGAGCATACAAACTCTAATTCAATTTATACAGCATTTGAAATAA 394 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGT----ATAGAAGATGTTTAAACATCAAACAT 18963 | | || ||| |||||||| | || ||| |||||| | | |||||| Sbjct 395 TCTCCAAAATTCT---TTCATTAGATATCTTATTATTTAAG-TGTTTATAGAGTAAACAT 450 Query 18964 GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCA 19023 ||||||||| || | || || ||||| ||||| | ||||||| ||||| | |||| Sbjct 451 GCAAAATCAGTGTGCATGCCTTCATCTCTGCTTATGAGTTCATTACTGAATGTCAGACCA 510 Query 19024 GGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATA 19083 ||||| | ||| | || || | |||||| |||| | ||||| || || || || ||| Sbjct 511 GGCATTAATCCGCGCTTCTTCATCCAGAAGATAGCACAGAATGAGCCTGAGAAAAAGATA 570 Query 19084 CCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA--- 19140 ||||| | || || || || |||| |||||| || ||| | |||| | ||| Sbjct 571 CCTTCAATAGCAGCGAATGCTACTAATCTTTCGGCA----TAGGA--ATTA-TCTGAGCC 623 Query 19141 -ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT-ATAGAAT 19198 |||||||| | ||||| || ||||| || ||| | | | ||| | | || | | Sbjct 624 TATCCATTTTAAGGCCCATTCGGCCTTTTTAGCAACA-ACCGGAATGTTTGTGATTGCTT 682 Query 19199 TAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258 |||| || | || | || ||| | | || | ||| || | | | ||| Sbjct 683 TAAAAAGGAAGTCTTTATCTTATGGATCAGTGATGTAGGTATCAATGAGAAGAGAGTAGG 742 Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 | ||||| ||||| || || || ||| | |||||||||||| ||||| || || | | Sbjct 743 TCTCTGAGTGAATGTTCTCCATCATCATTTAAAATCCGTAAAAGCATCTAGCCTCAGGAA 802 Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378 | | | |||| | || || |||| ||||||| ||| |||||||||||||||||| | Sbjct 803 TTTAGATTTCAGTGCAGAACCTTTAAGCCAAATTCTCAAGAACTATTCCATCACTAGCAG 862 Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAAT 19438 | ||||| || | ||||| |||||||| ||||||||| | | | | | | | ||| | Sbjct 863 CGAAAAAGGCAAGAACATGCTTAATAAAGTGTTTTTCACCATCGTTGAGTTTTTCCCAGT 922 Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 | |||| ||| ||| ||| |||| ||| ||| | ||||| || ||||| | | || Sbjct 923 CTTTAACATCAGTAGCTAAGTCTATTTCCTCAGCAGTCCAGAAGCAAGCCATTTAATCTT 982 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | ||||| |||||||||||| ||| || || ||||| ||||| Sbjct 983 TGTACATCTTCCATATATCATTGTATCTGATGGGTAATATTACAAA 1028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561966558368160