Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3091 114 2e-20 seq3090 114 2e-20 seq3089 114 2e-20 seq18505 113 8e-20 seq16133 98.7 2e-15 seq3925 89.7 9e-13 >seq3091 Length=1223 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 ||||| || ||||||||||||| || |||| ||| | |||| ||| || ||||| Sbjct 845 ATTTACATTCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTG 786 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || ||||| ||| || | ||||||||| || ||||| | ||| |||||| Sbjct 785 TAGTCACTTAGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGA 726 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || || | || |||| || | ||| || || || || Sbjct 725 TCGGGGGGAATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAG 666 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || ||||| || || || || || | ||||| || || |||||||| Sbjct 665 GGTTCAACATCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 610 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| | || | || | || | || | ||| || | || || Sbjct 617 ATTTGCATACCACCTCTGAGTCTCAACACTAAGTGGAGGGTTGACTCCTTCTAGATGTTG 558 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||| || ||||| ||| || | ||||||||||||||| || | ||| |||||| Sbjct 557 TAGTCGCTCAAGGTTCTGCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGTCTTTGTTGA 498 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| |||||||| || |||| || | || |||||| || || Sbjct 497 TCGGGTGGGATGCCTTCCTTATCTTGGATCTTGGCCTTCACGTTCTCAATAGTGTCTGAT 438 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || ||||| || || || || || || || || || || |||| ||| Sbjct 437 GGTTCAACGTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTACAT 382 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 |||||||| | || || |||| ||| | || | ||| || || |||||||||||| Sbjct 1064 CCACCTCTTAGTCTGAGCACCAAATGGAGAGTTGACTCCTTTTGGATGTTATAGTCGGAT 1005 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||||| ||| || ||||| ||||| || || || ||||| | |||||| || || Sbjct 1004 AGAGTTCTTCCATCTTCCAATTGCTTTCCTGCGAAGATCAATCTTTATTGATCGGGTGGG 945 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || || |||||||| || |||| || | ||| ||| || || || | |||||| Sbjct 944 ATACCCTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAACA 885 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || | || || || || |||| |||| Sbjct 884 TCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACATT 837 >seq3090 Length=995 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 ||||| || ||||||||||||| || |||| ||| | |||| ||| || ||||| Sbjct 617 ATTTACATTCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTG 558 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || ||||| ||| || | ||||||||| || ||||| | ||| |||||| Sbjct 557 TAGTCACTTAGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGA 498 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || || | || |||| || | ||| || || || || Sbjct 497 TCGGGGGGAATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAG 438 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || ||||| || || || || || | ||||| || || |||||||| Sbjct 437 GGTTCAACATCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 |||||||| | || || |||| ||| | || | ||| || || |||||||||||| Sbjct 836 CCACCTCTTAGTCTGAGCACCAAATGGAGAGTTGACTCCTTTTGGATGTTATAGTCGGAT 777 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||||| ||| || ||||| ||||| || || || ||||| | |||||| || || Sbjct 776 AGAGTTCTTCCATCTTCCAATTGCTTTCCTGCGAAGATCAATCTTTATTGATCGGGTGGG 717 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || || || |||||||| || |||| || | ||| ||| || || || | |||||| Sbjct 716 ATACCCTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAACA 657 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || | || || || || |||| |||| Sbjct 656 TCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACATT 609 Score = 89.7 bits (98), Expect = 9e-13 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| | || | || | || | || | ||| || | || || Sbjct 389 ATTTGCATACCACCTCTGAGTCTCAACACTAAGTGGAGGGTTGACTCCTTCTAGATGTTG 330 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||| || ||||| ||| || | ||||||||||||||| || | ||| |||||| Sbjct 329 TAGTCGCTCAAGGTTCTGCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGTCTTTGTTGA 270 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || ||||| || || | || | || ||| || || || Sbjct 269 TCGGGTGGGATGCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGTCTGAT 210 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | ||| || || | || || || ||||| |||| || || || || || | ||| || Sbjct 209 GGCTCTACGTCCAATGTAATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACATGTT 151 >seq3089 Length=958 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 ||||| || ||||||||||||| || |||| ||| | |||| ||| || ||||| Sbjct 617 ATTTACATTCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTG 558 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || ||||| ||| || | ||||||||| || ||||| | ||| |||||| Sbjct 557 TAGTCACTTAGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGA 498 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || || | || |||| || | ||| || || || || Sbjct 497 TCGGGGGGAATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAG 438 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || ||||| || || || || || | ||||| || || |||||||| Sbjct 437 GGTTCAACATCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 Score = 89.7 bits (98), Expect = 9e-13 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| | || | || | || | || | ||| || | || || Sbjct 389 ATTTGCATACCACCTCTGAGTCTCAACACTAAGTGGAGGGTTGACTCCTTCTAGATGTTG 330 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||| || ||||| ||| || | ||||||||||||||| || | ||| |||||| Sbjct 329 TAGTCGCTCAAGGTTCTGCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGTCTTTGTTGA 270 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || ||||| || || | || | || ||| || || || Sbjct 269 TCGGGTGGGATGCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGTCTGAT 210 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | ||| || || | || || || ||||| |||| || || || || || | ||| || Sbjct 209 GGCTCTACGTCCAATGTAATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACATGTT 151 >seq18505 Length=3399 Score = 113 bits (124), Expect = 8e-20 Identities = 317/481 (66%), Gaps = 17/481 (4%) Strand=Plus/Plus Query 159708 AAACGAGGATCATTAATTGTAATTGAAGGTTTAGATAAAACAGGAAAAACAACGCAATGT 159767 ||||| || | || || || |||||||||||||| ||||||||||||| || | Sbjct 2722 AAACGTGGCTTGTTTATAGTTTTTGAAGGTTTAGATCGTTCAGGAAAAACAACATAAACT 2781 Query 159768 AATTATTTAATAGATAATTT---AATTAAAAATGANNNNNNNNNNNAATATATGAAATTT 159824 || | ||||| || |||| || ||||||||| || || || ||| Sbjct 2782 AAATTATTAATGGACTATTTTTAAAATAAAAATGAAAATGTGAG---ATTAATAAATTTT 2838 Query 159825 CCAGATAGAAATACAGAAATTGGTATNNNNNNNNNNNNNNNNNTAA--AATCAA-ATaaa 159881 ||| ||||||| || ||| ||| ||| ||| || |||| Sbjct 2839 CCAAATAGAAACACTATAATAGGTTCAATGATTAATGAATATTTAACAAATAAAGATAAT 2898 Query 159882 aaaaTATCCGATGAAGTAATTCATCTATTATTTTCTGCAAATAGATGGGAA-AAATATAA 159940 ||| | ||||| |||||| || |||| ||| |||||||||||||| ||| | || Sbjct 2899 AAACTGAATAATGAAACTATTCATTTACTATTCTCTTCAAATAGATGGGAATAAAGAGAA 2958 Query 159941 TGAAATAATTAAAACGTT-AGAAATGGGTATTACTATAATTATG-GATAGATATTGCTAT 159998 || || | |||| || || || || | | ||||| |||| |||||||||| | | Sbjct 2959 -GATATCTTATAAACATTAAGTGAT-GGAACTCATATAA-TATGTGATAGATATTCATTT 3015 Query 159999 TCCGGAGTAGCTTATTCAGCATCTAAAGGTATTGATATAAATTGGTGCAAATATTCTGAT 160058 || ||| | |||||||||| | ||||| || | |||||||| ||| ||||| Sbjct 3016 TCTGGAATTTCTTATTCAGCTGCCAAAGGACTTCCATTTGATTGGTGCTTATAACCTGAT 3075 Query 160059 ATTGGATTACCTAAACCGGATAAAGTTATATTTTtatata-tggatattgaaaaaatcgc 160117 |||||||| || || ||| ||| || || ||| ||| |||| || | ||| | Sbjct 3076 TAAGGATTACCAAAGCCTGATTTAGTAATTTTCTTAGATATTGGAGCTT-AGAAATTATA 3134 Query 160118 atatagaaataattatggagatgaaatatatgaaaaaatagaatttcagaaaaaagtata 160177 ||| ||| | ||||| || |||| |||||||| ||| |||||| ||| |||| || Sbjct 3135 ATAAAGATCTGGATATGGTGAAGAAAGATATGAAAGAATTGAATTTTAGAGTGAAGTTTA 3194 Query 160178 t 160178 | Sbjct 3195 T 3195 >seq16133 Length=3301 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| ||||||| | | || ||||| |||||||| | ||||||| || |||||||| Sbjct 1170 ATCCTCTAATTATCTACCTGCAAATATTAATCTTTAACAATCAGGATCAATACCTTCTTT 1111 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| |||||| ||||| ||||| ||||| || | ||||| |||| ||||| Sbjct 1110 ATCTTATATTTTTTATTTTACATTTAGTATAGTGTCTTTTGGTTCAACATCTAATGTTAT 1051 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| || ||||| | | |||||| |||| Sbjct 1050 TGTCTTTCCTGTGAGGGTTTTAATATATATTTACATT 1014 Score = 91.5 bits (100), Expect = 3e-13 Identities = 132/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 || ||||||||| | ||||| ||| ||||||| |||||| ||||| |||| ||| Sbjct 717 AAAATTATAGTCTTTAAGTGTTCTCATATCCTCTAATTATTTTCCTGCAAAGATTATTCT 658 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTA-TTTTGGTTTTTATATTTAAAATAG 193296 | || |||||||||||||||||| |||||| | |||| ||| ||| || ||| | Sbjct 657 TTATTAGTCAGGAGGTATTCCTTCTACATCTTGAATTTTTAATTTAAATACTT-CAATGG 599 Query 193297 TATCGGAAGACT--CAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATAT 193354 ||| | | | | ||| || ||||| |||||| ||||||| || || ||||||| Sbjct 598 AATCTGTAAATTTGCAA--AATATAGTTAAAGTTTTTCCTGTTAAGGTCTTAACAAATAC 541 Query 193355 TT 193356 || Sbjct 540 TT 539 >seq3925 Length=2882 Score = 89.7 bits (98), Expect = 9e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 |||||||| |||| | || | ||||| |||| || || | |||||||| || || Sbjct 619 CCACCTCTTAATCTTAAAACTAAATGCAGTGTACTTTCATTTTATATATTATAATCAGAG 678 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||| || | || | | |||| ||||| |||| ||| | || ||| |||||| Sbjct 679 AGAGTTATATGACTTTCAAGCTACGTTCCAGCAAATATTATTCTTTATTAATCTGGAGGT 738 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 ||||| |||||||||| |||||| ||| |||| ||| || || || | Sbjct 739 ATTCCCTCTTTATCTTATATTTTAAATTTAATATCATCAATCGTTTCATTAGTATATGTA 798 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGTA 193370 | || || |||||||| || |||| ||||||| | | |||||||||| ||| || Sbjct 799 TTTATTGTAATAGTTTTCCCAGTTAAGGTTTTTATATAAATTTGCATTTATTTACTA 855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899426742454080