Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq14708 143 5e-29 seq11541 141 2e-28 seq12968 136 7e-27 seq3088 120 5e-22 seq3089 113 8e-20 seq16133 105 1e-17 seq3090 105 1e-17 seq16625 104 4e-17 seq3091 100 5e-16 seq5846 86.0 1e-11 seq3925 86.0 1e-11 >seq14708 Length=579 Score = 143 bits (158), Expect = 5e-29 Identities = 190/263 (72%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 171807 TAATAGATATAGAGTATACTTTTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAA 171866 ||| | |||||| | | | ||||||| | || || ||||| | || |||||||||| Sbjct 493 TAAAATATATAGCTTTCAATATTTAGTTACTCAA--CCTCCTCTCAATCTTAATACTAAA 436 Query 171867 TGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGT 171926 || || || | || || ||| ||||| || ||||||| || | | || || | | | Sbjct 435 TGCAAGGTTGATTCCTTCTGAATGTTATAGTCAGATAAAGTTCTTCCATCTTCAAGCTAT 376 Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 || || ||||| || ||||| | ||| || ||||| || ||||| ||||||| ||||| Sbjct 375 TTTCCTGCAAAGATCAATCTTTATTGATCGGGTGGAATACCTTCCTTATCTTAGATTTTT 316 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 ||| ||||| || || || || | || || |||| ||||||||| || |||||| Sbjct 315 GCTTTAACATTTTCAATTGTGTCAGATGGCTCAACATCTAAAGTAATGGTCTTTCCAGTT 256 Query 172047 AATGTTTTAATGAATATCTGCAT 172069 |||||||||| ||| |||| ||| Sbjct 255 AATGTTTTAACGAAGATCTACAT 233 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || || ||||| ||||| |||| ||||| | || || || ||| Sbjct 234 ATACCTCCTCTTAATCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAGTCT 175 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | | || || || ||||||||||| || || | ||||| ||| |||||| Sbjct 174 GATAATGTTCTTCCATCTTCTAACTGTTTACCAGCGAATATGAGTCTCTATTGATCAGGT 115 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || | || || ||| ||||| || |||||||| | ||| Sbjct 114 GGAATACCTTCTTTGTCCTAGATCTTTGCTTTCACATTCTCAATGGTATCTGATGGCTCT 55 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||||| || ||||| | ||||||| ||| |||| ||| Sbjct 54 ACGTCCAAGGTAATGGTCTTTCCAGTAAGAGTTTTAACGAAGATCTACAT 5 >seq11541 Length=746 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| | || |||||||||||| || || | || || ||| ||||| || || Sbjct 610 ACCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTCAGA 551 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||||| || | | || || | | ||| || ||||| || ||||| | ||| || ||||| Sbjct 550 TAAAGTTCTTCCATCTTCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGGTGG 491 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| ||||||| ||||| ||| ||||| || || || || | || || Sbjct 490 AATACCTTCCTTATCTTAGATTTTTGCTTTAACATTTTCAATTGTGTCAGATGGCTCAAC 431 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| ||||||||| || |||||||||||||||| ||| |||| ||| Sbjct 430 ATCTAAAGTAATGGTCTTTCCAGTTAATGTTTTAACGAAGATCTACAT 383 >seq12968 Length=2778 Score = 136 bits (150), Expect = 7e-27 Identities = 339/499 (68%), Gaps = 28/499 (6%) Strand=Plus/Plus Query 38847 ACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAATTCATAAAATCAAAT 38906 ||| | || || || |||||||| || ||| || ||| || | | ||| | |||||| Sbjct 172 ACTCTCTTCTCAAAGAAGTTTGTCTTGCCTGGTAGTGAAATCATTTCCATCCACTCAAAT 231 Query 38907 GGATTTTTGGTATTATAATATTT---TTCTCCTATCAATACATATAATAATCTATCGGCC 38963 |||||| ||| || || || | |||||| | || | | || |||||| ||| Sbjct 232 GGATTTAACACATTGTAGTACTTAGGTACTCCTA---AAGCAAAGAGTAGTCTATCAGCC 288 Query 38964 ACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAA-TGGTAA 39022 ||||||| | |||||| |||||| | | |||||||||| ||||| || || ||| | Sbjct 289 ACAAATTATATATATTGAGCCATTAAGTTAGAATTCATACC-AATAAGTTCAACTGGGAG 347 Query 39023 TGCATCATCA-ATAAATTCtttttctatttctacagcttgtttaattatcataattatat 39081 || | | || | ||| ||| ||| |||| |||||| | | ||| ||| | | || Sbjct 348 AGC-TGAGCATACAAACTCTAATTCAATTTATACAGCATTTGAAATAATCTCCA--AAAT 404 Query 39082 tattt--tttgataatttat-atttaatatgattcgcatataGTAAACATGCAAAATCCG 39138 | ||| || |||| |||| |||||| || || ||| ||||||||||||||||| | Sbjct 405 TCTTTCATTAGATATCTTATTATTTAAG-TGTTT---ATAGAGTAAACATGCAAAATCAG 460 Query 39139 TATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATC 39198 | || | ||||| || || ||| | ||||||||| || || | || |||||||||| Sbjct 461 TGTGCATGCCTTCATCTCTGCTTATGAGTTCATTACTGAATGTCAGACCAGGCATTAATC 520 Query 39199 CTCTCTTTTTAAGCCAAAATATTGATGCAAAACTA-CTAGAAAAGAATATACCCTCCACA 39257 | | ||| || | ||| || || | || || | | || || || ||||| || | | Sbjct 521 CGCGCTTCTTCATCCAGAAGATAG-CACAGAATGAGCCTGAGAAAAAGATACCTTCAATA 579 Query 39258 CACGCAAATGCTATTATTCTTGCTCCAAA--CATTAATTTATCATCTAAAATCCAATTTA 39315 || ||||||| || |||| | || | |||| | | | | ||||| |||| Sbjct 580 GCAGCGAATGCTACTAATCTTTCGGCATAGGAATTATCTGAGCCT-----ATCCATTTTA 634 Query 39316 TGGCCCAATCTGCtttttt 39334 |||||| || || ||||| Sbjct 635 AGGCCCATTCGGCCTTTTT 653 >seq3088 Length=519 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| | || |||||||||||| || || | || || ||| ||||| || || Sbjct 383 ACCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTCAGA 324 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||||| || | | || || | | ||| || ||||| || ||||| | ||| || ||||| Sbjct 323 TAAAGTTCTTCCATCTTCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGGTGG 264 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || ||||| || | || ||| ||| || || || |||||||| | || || Sbjct 263 GATGCCCTCTTTGTCCTAAATCTTAGCTTTCACGTTTTCAATTGTATCTGAGGGCTCAAC 204 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 |||| || || ||||| ||||| | |||||||| ||| || | |||||| Sbjct 203 ATCTAAGGTGATAGTTTTGCCAGTGAGTGTTTTAACGAAAATTTACATTTT 153 >seq3089 Length=958 Score = 113 bits (124), Expect = 8e-20 Identities = 184/264 (70%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 171807 TAATAGATATAGAGTATACTTTTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAA 171866 ||| | |||||| | | | ||||||| | || || ||||| | || |||||||||| Sbjct 870 TAAAATATATAGCTTTCAATATTTAGTTACTCAA--CCTCCTCTCAATCTTAATACTAAA 813 Query 171867 TGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGT 171926 || || || | || || ||| ||||| || ||||| | || | | || || | |||| Sbjct 812 TGCAAGGTTGATTCCTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCAAGTTGT 753 Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||| || || ||||| | ||| || ||||| || || || |||||||| || || Sbjct 752 TTACCAGCGAAGATCAATCTTTATTGATCGGGTGGGATACCCTCCTTATCTTGAATCTTG 693 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || ||||| || || || || | || || || || || ||||| || ||||| Sbjct 692 GCCTTGACATTCTCAATGGTGTCAGATGGCTCAACATCAAGGGTGATGGTCTTGCCAGTC 633 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 || || || | ||| || | |||| Sbjct 632 AAAGTCTTGACGAAGATTTACATT 609 Score = 105 bits (116), Expect = 1e-17 Identities = 169/237 (71%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| || ||||| || | || | ||| || | || || || || Sbjct 383 ATACCACCTCTGAGTCTCAACACTAAGTGGAGGGTTGACTCCTTCTAGATGTTGTAGTC- 325 Query 171900 GATAAAGATCGTTC-GTCATC--CAA-TTGTTTACCAGCAAAAATTAATCTCTGTTGGTC 171955 | | ||| |||| | |||| ||| |||||| || ||||| || | ||| ||||| || Sbjct 324 GCTCAAG---GTTCTGCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGTCTTTGTTGATC 268 Query 171956 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 ||||| || ||||| || ||||| || ||| || || || || || ||||| | Sbjct 267 GGGTGGGATGCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGTCTGATGG 208 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || | |||||||| ||||| ||||| || |||| ||| |||| ||| || Sbjct 207 CTCTACGTCCAATGTAATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACATGTT 151 >seq16133 Length=3301 Score = 105 bits (116), Expect = 1e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 171858 AATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCA 171917 || |||||||| ||||| | || || | ||||||||||||| ||| | | || Sbjct 1226 AAAACTAAATGCAAAGTTGATTCCTTTTATATATTATAATCTGCTAATTAAAAGCCATCC 1167 Query 171918 TCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCT 171977 || |||| | |||| ||||| |||||||| | ||||| || |||||||||||| Sbjct 1166 TCTAATTATCTACCTGCAAATATTAATCTTTAACAATCAGGATCAATACCTTCTTTATCT 1107 Query 171978 TGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTT 172037 | |||||| | ||||||||| |||||| ||| | ||| || |||| || || || Sbjct 1106 TATATTTTTTATTTTACATTTAGTATAGTGTCTTTTGGTTCAACATCTAATGTTATTGTC 1047 Query 172038 TTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || | |||||||| |||| | |||| Sbjct 1046 TTTCCTGTGAGGGTTTTAATATATATTTACATT 1014 >seq3090 Length=995 Score = 105 bits (116), Expect = 1e-17 Identities = 169/237 (71%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| || ||||| || | || | ||| || | || || || || Sbjct 383 ATACCACCTCTGAGTCTCAACACTAAGTGGAGGGTTGACTCCTTCTAGATGTTGTAGTC- 325 Query 171900 GATAAAGATCGTTC-GTCATC--CAA-TTGTTTACCAGCAAAAATTAATCTCTGTTGGTC 171955 | | ||| |||| | |||| ||| |||||| || ||||| || | ||| ||||| || Sbjct 324 GCTCAAG---GTTCTGCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGTCTTTGTTGATC 268 Query 171956 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 ||||| || ||||| || ||||| || ||| || || || || || ||||| | Sbjct 267 GGGTGGGATGCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGTCTGATGG 208 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || | |||||||| ||||| ||||| || |||| ||| |||| ||| || Sbjct 207 CTCTACGTCCAATGTAATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACATGTT 151 >seq16625 Length=1685 Score = 104 bits (114), Expect = 4e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| || | ||| || ||||| | ||| ||||| ||||||||||||||| Sbjct 810 CCCCCTCTTAGCCTTAAAACCAAATGAAGAGTGCTTTCTTTTTGAATATTATAATCTGAG 869 Query 171903 AAAGATCGTTCGTCATCC-AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || | ||| |||| ||| |||||||| || | || || || || ||||| Sbjct 870 AGTGAAT-TTAATAATCTTAATTATTTCCCAGCAAATATCATTCGCTATTAATCTGGTGG 928 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||| ||||||||||| | | || || |||||| | ||| || ||| | |||||| Sbjct 929 TATGCCTTCTTTATCCTAGACTTAATATTTTACTTCTCCAATATAATTTGAAGGTTCTAC 988 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 |||| ||| | ||||||||||| | || || | || ||||||||| Sbjct 989 GTCTAAAGTTACTGTTTTACCAGTGAGAGTCTTTAAAAAAATCTGCATT 1037 >seq3091 Length=1223 Score = 100 bits (110), Expect = 5e-16 Identities = 166/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| || ||||| || | || | ||| || | || || || || Sbjct 611 ATACCACCTCTGAGTCTCAACACTAAGTGGAGGGTTGACTCCTTCTAGATGTTGTAGTC- 553 Query 171900 GATAAAGATCGTTC-GTCATC--CAA-TTGTTTACCAGCAAAAATTAATCTCTGTTGGTC 171955 | | ||| |||| | |||| ||| |||||| || ||||| || | ||| ||||| || Sbjct 552 GCTCAAG---GTTCTGCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGTCTTTGTTGATC 496 Query 171956 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 ||||| || ||||| |||||||| || || || || || ||||| ||||| | Sbjct 495 GGGTGGGATGCCTTCCTTATCTTGGATCTTGGCCTTCACGTTCTCAATAGTGTCTGATGG 436 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| || || ||||| ||||| || ||||| | || |||| ||| || | ||| Sbjct 435 TTCAACGTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTACAT 382 >seq5846 Length=3076 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 |||||||| | |||| ||||| | ||||||||||| || | | | || || Sbjct 1000 ACTAAATGCAGTGTAGATTCTTTCTATATATTATAATCGATTAGTTACAGACCATCTTCT 941 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 |||| || |||||||| |||| |||| || || || ||| || || ||||| | | Sbjct 940 AATTACTTTCCAGCAAATATTAGCCTCTATTCCTCTGGGTCTATACCCTCCTTATCCTAT 881 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || ||| |||| ||| |||||||| | |||| | || | |||||| ||||| Sbjct 880 ATCTTAGCCTTTATATTTTCAATAGTATCACTTGGTTCTGCATCAATAGTAATTGTTTTT 821 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||| ||||||| || || |||||| Sbjct 820 CCTGTTAAAGTTTTAACAAAGATTTGCATT 791 >seq3925 Length=2882 Score = 86.0 bits (94), Expect = 1e-11 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 |||||||| | || ||| |||||||| | ||| || || | ||||||||||| || Sbjct 619 CCACCTCTTAATCTTAAAACTAAATGCAGTGTACTTTCATTTTATATATTATAATCAGAG 678 Query 171903 AAAGATCGTTCGTCATCCAA-TTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || | | | | | ||| | | |||||||| |||| ||| | || || || || Sbjct 679 AGAG-TTATATGACTTTCAAGCTACGTTCCAGCAAATATTATTCTTTATTAATCTGGAGG 737 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATC-TGACGAT-TCT 172019 |||||| |||||||||| ||||||| ||| | || | || || || | | || | | Sbjct 738 TATTCCCTCTTTATCTTATATTTTAAATTTAATATCATCAATCGTTTCATTAGTATATGT 797 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTT 172071 | | || ||||| ||||| |||||||| ||||| || | || ||||||| Sbjct 798 A--TTTATTGTAATAGTTTTCCCAGTTAAGGTTTTTATATAAATTTGCATTT 847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904906955335200