Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq17469 100 8e-16 seq15651 93.3 1e-13 >seq17469 Length=8276 Score = 100 bits (110), Expect = 8e-16 Identities = 249/373 (67%), Gaps = 10/373 (3%) Strand=Plus/Minus Query 302509 TAGGAATACTGAATGATTTTGTTCTTGTTAT-TTCTTACGGTCATATCATAACCAATCAT 302567 |||||| |||||||| || |||||| | || |||| || || |||||| ||| Sbjct 5640 TAGGAA--CTGAATGACTT-GTTCTTTTGATGTTCTCACAGTACCATCATACTTGGCCAT 5584 Query 302568 AATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTAC 302627 | ||||| | |||||| ||||| || ||||| || || ||| || || || || Sbjct 5583 TACATCTTCTAATGCCTTGATCAAACGGCGTTGAATGTAGCCGGTTTCAGCAGTCTTCAC 5524 Query 302628 AGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCG 302687 || ||||| || || || | | || ||||||||||| ||||| | || || Sbjct 5523 TGCCGTATCGATAAGTCCTTCTCTCCCGCCCATAGCATGAAAGAAGAATTCAGATGGAGT 5464 Query 302688 TAGCCCCCCAATAAAGGAGC---TCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 ||| |||| | ||| ||| | || |||||||| || |||||| | ||| Sbjct 5463 TAG---CCCATTCAAGTAGCAATTTTCCACGAAACCTTTCGACTCGGGGCCAAAGTCATC 5407 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 ||| | |||||| ||||| || || || | | | ||| |||| ||||| || || || || Sbjct 5406 CTTTGAAAAGTGAGGCAGAGTTCTCTTTTTAAATCCGAATGGAATACGTTTACCCTCGAC 5347 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||| | |||||| | || | || || ||||| || || || | ||||| || || Sbjct 5346 GTTTTACTGTCCTACACAGGCCATGATTTGCGAGATGTTCAAGTTGGAACCCTTAGAACC 5287 Query 302865 AGCATTTACCATA 302877 ||| |||||| Sbjct 5286 CGCAAAAACCATA 5274 >seq15651 Length=2663 Score = 93.3 bits (102), Expect = 1e-13 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 || ||||||||||||||||||||||| || || || || | || || | |||||||| Sbjct 1427 CTCTTTTTACCAACAGCATCAATTTCATCTATAAAGATGATGCAGGGTGCCTTTTGTCTT 1368 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || || |||| || | || || || || || | || || ||||||| || || Sbjct 1367 GCCTTTTTGAATAGATCACGAACTCGAGAAGCACCCACTCCTACGAACATTTCAACGAAG 1308 Query 289141 TCAGAAGCGGATACTTGAATG-AATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 ||||| | |||| | ||| | |||| || || || || || || |||||| | || || Sbjct 1307 TCAGACCCAGATA-TGGAAAGAAATGGAACCTTGGCCTCACCGGCAACTGCCTTTGCTAG 1249 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 || || ||||| || ||||| || | |||| | | || |||||||| | || || Sbjct 1248 TAGAGTTTTACCACAGCCTGGTGGACCTACCAATAAAGCACCTCTTGGTACTCTAGCACC 1189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471435845470228