Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq3539 87.8 2e-12 seq8537 86.0 8e-12 >seq3539 Length=1811 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 172401 GAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG-T 172459 |||||||| ||| | || |||||| ||| || | ||||| ||| |||| || | | Sbjct 1004 GAACTTTTCTGGTTCATGAAAGGTGACACTAATGCCAAACATTTATCAGATA-AGAAGAT 1062 Query 172460 TAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAG 172519 || | ||||| ||| || | |||| | | ||| |||||| | ||| | || ||||| Sbjct 1063 TAGAATTTGGGATGGGAACGCTTCTAGAGCCTTTCTAGATTCACTCGGTCTCACCGAAAG 1122 Query 172520 AAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACA 172564 | ||||| | || ||||||||| | ||||| || ||||||||||| Sbjct 1123 AGAAGAATGGGACTTAGGCCCAGTATATGGCTTCCAATGGAGACA 1167 >seq8537 Length=3923 Score = 86.0 bits (94), Expect = 8e-12 Identities = 114/155 (74%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 194239 ATACCTGAAATAGGGGATAAATTTTGTTCG--GGAATGGCTCAAAAAGGAACTTGTGGTA 194296 |||||| ||||||| ||||||||| | | | || |||| | | |||||||| |||| Sbjct 830 ATACCTTAAATAGGAGATAAATTT-GCTAGTAGGCATGGTT-AGAAAGGAACGGTCGGTA 773 Query 194297 TGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTA 194356 ||| ||| | |||||||||||||||| || | ||| || || || ||| |||||| Sbjct 772 TGACCTATAGATAAGAAGATATGCCATTCACTAGAGAAGGAATTGTGCCTGATCTTATTA 713 Query 194357 TCAATCCAAATTGTATTCCGTCCAGAATGACCATT 194391 ||||||| || || || ||||||||| ||| Sbjct 712 TCAATCCTCATGCCATACCTAGCAGAATGACTATT 678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632329548506720