Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq14708 122 7e-23 seq11541 122 7e-23 seq3089 122 7e-23 seq3091 114 1e-20 seq3090 114 1e-20 seq3088 104 2e-17 seq16625 82.4 6e-11 >seq14708 Length=579 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| ||||| | | || ||||| | || ||||| || ||||||||||| || | Sbjct 459 CCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTCAGAT 400 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || || | ||| || ||| | |||||||||| ||||| || ||| Sbjct 399 AAAGTTCTTCCATCTTCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGGTGGA 340 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || || |||| | |||| ||| ||| |||| | |||||||| | || || Sbjct 339 ATACCTTCCTTATCTTAGATTTTTGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACA 280 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || || || |||||||| |||||||| || |||| ||| Sbjct 279 TCTAAAGTAATGGTCTTTCCAGTTAATGTTTTAACGAAGATCTACAT 233 >seq11541 Length=746 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| ||||| | | || ||||| | || ||||| || ||||||||||| || | Sbjct 609 CCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTCAGAT 550 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || || | ||| || ||| | |||||||||| ||||| || ||| Sbjct 549 AAAGTTCTTCCATCTTCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGGTGGA 490 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || || |||| | |||| ||| ||| |||| | |||||||| | || || Sbjct 489 ATACCTTCCTTATCTTAGATTTTTGCTTTAACATTTTCAATTGTGTCAGATGGCTCAACA 430 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || || || |||||||| |||||||| || |||| ||| Sbjct 429 TCTAAAGTAATGGTCTTTCCAGTTAATGTTTTAACGAAGATCTACAT 383 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || || | || || || || | || |||||||||| ||||| || || | Sbjct 381 CCTCCTCTTAATCTCAAGACTAAGTGTAATGTAGATTCTTTTTAGATGTTGTAGTCTGAT 322 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || || ||||| ||||| |||| | ||| | ||||| || || Sbjct 321 AATGTTCTTCCATCTTCTAGCTGTTTTCCAGCGAATATGAGTCTCTATTGATCGGGTGGG 262 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| ||||| | ||| || | |||||| |||| | || || || | || || Sbjct 261 ATGCCCTCCTTGTCCTA-AATCTTAGCTTTGACGTTTTCAATTGTATCTGAGGGCTCAAC 203 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | || |||||||||||||| | |||||||| || || | |||||| Sbjct 202 ATCTAAGGTGATAGTTTTGCCAGTGAGTGTTTTAACGAAAATTTACATTTT 152 >seq3089 Length=958 Score = 122 bits (134), Expect = 7e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| ||||| | | || ||||| | || ||||| |||||||||||||| || | Sbjct 836 CCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTTTGAATGTTATAGTCAGAT 777 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || |||||||| ||||| | |||||||||| ||||| || || Sbjct 776 AATGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAGATCAATCTTTATTGATCGGGTGGG 717 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| || ||||| ||| || | |||||| | || | |||||||| | || || Sbjct 716 ATACCCTCCTTATCTTG-AATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAAC 658 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || || |||||||| || || || || || || | |||| Sbjct 657 ATCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACATT 609 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || ||||| | || |||||||| || || || || ||||| || || || || Sbjct 609 TCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACT 550 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| ||||||||||| ||||| | || | |||||| ||||| || || Sbjct 549 TAGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGG 490 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||| || ||||| | | || ||||| |||| | ||||| || |||| || Sbjct 489 AATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAAC 430 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || ||||| || ||||| || || || ||||| Sbjct 429 ATCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 >seq3091 Length=1223 Score = 114 bits (126), Expect = 1e-20 Identities = 171/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 29549 TTTATCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGT 29608 || ||| |||||| || || | | ||||||||||| || || || || ||||| |||| Sbjct 1075 TTCATCATTGTCCACCTCTTAGTCTGAGCACCAAATGGAGAGTTGACTCCTTTTGGATGT 1016 Query 29609 TATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCT 29668 |||| || | | || | ||| || | ||| || || || | |||||||||| | Sbjct 1015 TATAGTCGGATAGAGTTCTTCCATCTTCCAATTGCTTTCCTGCGAAGATCAATCTTTATT 956 Query 29669 GATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCA 29727 |||| || || |||||||| || ||||| ||| || | |||||| | || | |||||| Sbjct 955 GATCGGGTGGGATACCCTCCTTATCTTG-AATCTTGGCCTTGACATTCTCAATGGTGTCA 897 Query 29728 GAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | || || ||||| || || || |||||||| || || || || || || | |||| Sbjct 896 GATGGCTCAACATCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACATT 837 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || ||||| | || |||||||| || || || || ||||| || || || || Sbjct 837 TCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACT 778 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| ||||||||||| ||||| | || | |||||| ||||| || || Sbjct 777 TAGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGG 718 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||| || ||||| | | || ||||| |||| | ||||| || |||| || Sbjct 717 AATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAAC 658 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || ||||| || ||||| || || || ||||| Sbjct 657 ATCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 610 >seq3090 Length=995 Score = 114 bits (126), Expect = 1e-20 Identities = 171/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 29549 TTTATCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGT 29608 || ||| |||||| || || | | ||||||||||| || || || || ||||| |||| Sbjct 847 TTCATCATTGTCCACCTCTTAGTCTGAGCACCAAATGGAGAGTTGACTCCTTTTGGATGT 788 Query 29609 TATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCT 29668 |||| || | | || | ||| || | ||| || || || | |||||||||| | Sbjct 787 TATAGTCGGATAGAGTTCTTCCATCTTCCAATTGCTTTCCTGCGAAGATCAATCTTTATT 728 Query 29669 GATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCA 29727 |||| || || |||||||| || ||||| ||| || | |||||| | || | |||||| Sbjct 727 GATCGGGTGGGATACCCTCCTTATCTTG-AATCTTGGCCTTGACATTCTCAATGGTGTCA 669 Query 29728 GAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | || || ||||| || || || |||||||| || || || || || || | |||| Sbjct 668 GATGGCTCAACATCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACATT 609 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || ||||| | || |||||||| || || || || ||||| || || || || Sbjct 609 TCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACT 550 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| ||||||||||| ||||| | || | |||||| ||||| || || Sbjct 549 TAGAGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGG 490 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||| || ||||| | | || ||||| |||| | ||||| || |||| || Sbjct 489 AATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAAC 430 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || ||||| || ||||| || || || ||||| Sbjct 429 ATCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 >seq3088 Length=519 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| ||||| | | || ||||| | || ||||| || ||||||||||| || | Sbjct 382 CCTCCTCTCAATCTTAATACTAAATGCAAGGTTGATTCCTTCTGAATGTTATAGTCAGAT 323 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || || | ||| || ||| | |||||||||| ||||| || || Sbjct 322 AAAGTTCTTCCATCTTCAAGCTATTTTCCTGCAAAGATCAATCTTTATTGATCGGGTGGG 263 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||||||||| | ||| || | ||| || |||| | || || || | || || Sbjct 262 ATGCCCTCTTTGTCCTA-AATCTTAGCTTTCACGTTTTCAATTGTATCTGAGGGCTCAAC 204 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | || |||||||||||||| | |||||||| || || | |||||| Sbjct 203 ATCTAAGGTGATAGTTTTGCCAGTGAGTGTTTTAACGAAAATTTACATTTT 153 >seq16625 Length=1685 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/215 (70%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTG-CGAGAATCATC 29636 ||||||||||| ||| |||||||||||| |||||||| | | ||| ||| ||| Sbjct 828 ACCAAATGAAGAGTGCTTTCTTTTTGAATATTATAATCTG--AGAGTGAATTTAATAATC 885 Query 29637 -GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTT 29695 | || ||| |||||| |||||| || | | ||| || || || || ||||| || | Sbjct 886 TTAATTATTTCCCAGCAAATATCATTCGCTATTAATCTGGTGGTATGCCTTCTTTATCCT 945 Query 29696 GTAATTTTTGTTTGACAGTTTCTACAGTGTCA---GAAAGTTCTACTTCAAGAGTTATAG 29752 | || | ||| || |||| || | | | ||| ||||||| || | ||||| | Sbjct 946 AGACTTAATATTTTAC---TTCTCCAATATAATTTGAAGGTTCTACGTCTAAAGTTACTG 1002 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| ||||| | || || | ||| ||||||||| Sbjct 1003 TTTTACCAGTGAGAGTCTTTAAAAAAATCTGCATT 1037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385124157274404