Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq16950 93.3 5e-14 seq17469 86.0 8e-12 seq3539 84.2 3e-11 seq8537 82.4 1e-10 >seq16950 Length=5385 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 50383 AAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTAGCTATGACTAAAGCATAT 50442 ||||| ||| | | |||| | | || |||| | | || || || | |||| | | ||| Sbjct 3976 AAAGTGAAAGTACTACCATTTCATACTTTTAGATTAAACTTGTCTGTTACTACACCTTAT 3917 Query 50443 AATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAGCTACT 50502 ||||||||||||||||| |||||||||||| | ||| ||| ||||||||| ||| Sbjct 3916 AATGCTGATTTTGATGGTGATGAAATGAATATGTTTGTCCCTTAATCATATGAGACTATG 3857 Query 50503 GCTGAATTACAAGAATTAA 50521 |||||| || ||||| ||| Sbjct 3856 GCTGAAGTAAAAGAAATAA 3838 >seq17469 Length=8276 Score = 86.0 bits (94), Expect = 8e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 50308 AGACAATTGATAGATGGTGATGATGTACTATTAAATAGGCAACCAACACTTCATAAAGCT 50367 ||||| || | ||||| ||| |||| | || |||||||| || || | ||||| Sbjct 4342 AGACATTTAAAAGATGATGACTATGTGATTTTCAATAGGCAGCCTTCATTGCATAAGATG 4401 Query 50368 TCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTAAAAACATTTAAAATGAATTTAGCT 50427 ||| | || || ||||||| || ||| |||||||| | ||||||| | Sbjct 4402 TCTCTCATGGGTCATAGAGTTAAAGTTTTGCCACATTCAACATTTAGATTGAATTTGAGT 4461 Query 50428 ATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAA 50487 | || | | ||||||| ||||| |||||||| ||||||||||| | ||||| || ||| Sbjct 4462 GTAACCACACCATATAACGCTGACTTTGATGGTGATGAAATGAACATGCATGTGCCACAA 4521 Query 50488 TCATATG 50494 || |||| Sbjct 4522 TCTTATG 4528 >seq3539 Length=1811 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 171613 GAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG-T 171671 |||||||| ||| | || |||||| ||| || | ||||| ||| |||| || | | Sbjct 1004 GAACTTTTCTGGTTCATGAAAGGTGACACTAATGCCAAACATTTATCAGATA-AGAAGAT 1062 Query 171672 TAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAG 171731 || | ||||| ||| || | |||| | | ||| |||||| | ||| | || ||||| Sbjct 1063 TAGAATTTGGGATGGGAACGCTTCTAGAGCCTTTCTAGATTCACTCGGTCTCACCGAAAG 1122 Query 171732 AAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACA 171776 | ||||| | || ||||| ||| | ||||| || ||||||||||| Sbjct 1123 AGAAGAATGGGACTTAGGCCCAGTATATGGCTTCCAATGGAGACA 1167 >seq8537 Length=3923 Score = 82.4 bits (90), Expect = 1e-10 Identities = 77/97 (79%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 192572 TGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGCTATAACCAAGAAGACAGTAT 192631 ||| || |||||| |||| |||||||||||||||||||| ||||| ||||||| || Sbjct 1284 TGGAATGAATGCTGTTGTGGCTATAGCTTGCTATACTGGATATAATTAAGAAGATTCGAT 1225 Query 192632 TATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTT 192668 ||| || ||| | || | ||||||||||| ||||| Sbjct 1224 TATATTCAATTAGTCTGCAATTGAAAGAGG--TATTT 1190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628372150179840