Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4398 286 3e-71 seq6685 123 2e-22 seq9125 100 2e-15 seq5058 100 2e-15 seq11755 95.1 9e-14 seq6871 87.8 1e-11 >seq4398 Length=2235 Score = 286 bits (316), Expect = 3e-71 Identities = 1006/1552 (65%), Gaps = 33/1552 (2%) Strand=Plus/Minus Query 281346 TCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATT 281405 ||||||| | |||| || || | || || ||| || ||||| || || |||| | Sbjct 1713 TCTCAATGTCCTCTTTTGACAAACGACCCTTATCATTGGTGATAGTGATCTTGTTGGTCT 1654 Query 281406 TGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATG 281465 | || || ||| | || | |||||| | ||||| |||||||| | ||| || | Sbjct 1653 TTCCGGTGCCCTTGTCAACAGCTGACACATTCAAGATACCGTTGGCATCAATATCGAAGG 1594 Query 281466 TGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTC 281525 |||||||||| | ||||| ||||| | || |||||||| || ||||| || ||| | | Sbjct 1593 TGACTTCAATCTATGGGACGCCTCTTGGTGCGGGTGGGATACCCTCCAAGTTGAATTTGC 1534 Query 281526 CCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTA 281585 | || || || || || || |||| || ||||| || || | ||| || || Sbjct 1533 CGAGGAGATGGTTGTCCTTGGTCAATTGTCTCTCACCTTCAAATACTTGAATGAGCACGC 1474 Query 281586 CAGTTTGATTATCTGAATAAGTTGTAAATACTCT-GGATTTTTTACAAGGAATTGTTGTG 281644 | | || ||||| | |||||| || || | ||| || || || ||||| || ||| Sbjct 1473 CTGGTTAGTTATCAGCATAAGTGGTGAAGA-TCTATGACTTCTTGGTTGGAATGGTGGTG 1415 Query 281645 TTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGA 281704 ||||| ||| | ||||||||| | ||| ||||| || || | ||| || || || ||| Sbjct 1414 TTTCTTGGAATGAGATTGGTCATCACACCGCCAGCAGTCTCGATACCGAGCGATAGTGGA 1355 Query 281705 GTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCT 281764 | ||||| | | | | || | | |||| |||| | ||| | || || Sbjct 1354 GCAACATCCAACAATAAGAGATCCTTCACGTTTTGATCACCCTCGCCAGTTAAGATGGCA 1295 Query 281765 GCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT 281824 ||||| | |||||||| ||||| ||||| ||||| ||||| | | | ||| | || Sbjct 1294 GCTTGGACTGCAGCACCGTATGCGACAGCCTCATCTGGATTGATTGATCTATTCAATTGC 1235 Query 281825 TTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCC 281883 || |||||||| || | | || | |||| | ||||| |||||||| | ||| || || Sbjct 1234 TTGCCATTGAAGAAGTCTTGGAGCA-TTGTTTGAACCTTGGGAATACGGGTTGAACCACC 1176 Query 281884 AACTAATACAATTTCATGCACCTGTGA----TTTATCCAGTTTTGAATCCAATAAAACTT 281939 || | ||||| ||| || | | ||| || || || ||| ||| || || | Sbjct 1175 GACGAGTACAACTTCGTGAA--TTTGACCCTTTGAT--AGACCTGAGTCCTTCAATACGT 1120 Query 281940 TTTCAAC-GGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCT 281998 |||| || ||| || | | ||| || | || |||||||| ||||| |||||| Sbjct 1119 TTTCTACTGGGGGCATG-CACTTTCTGAAGAGATCCATGCAAAGTTCCTCGAACTTAGCT 1061 Query 281999 CTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTT 282058 || | || | || | || ||||| ||| | || |||||| | | | Sbjct 1060 CTTGAAATTTAGGTGTTGAAGTCCTCACCTTCAGCCAAGGTCTCGCATTCAATGGGTGCT 1001 Query 282059 TGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTC----- 282113 ||||| | || || || ||| || || || ||| || |||| ||||| Sbjct 1000 TGAGTGGCAGCGGAGAGAATACGCTTTGCCTTCTCGCATTGAGTTCTTAATCTTCTGGTT 941 Query 282114 GTAAGGCTTTTGCTGATTGATTCAA-ATCTGTTTTATATTTTCTCTTGAAATCTTCAACA 282172 | | | |||| | | |||| | || || | ||||||| || | Sbjct 940 GCACGAGCATTGCCGGTAATGTCAATGCCAGTCTTCT------TCTTGAATTCGCTCATG 887 Query 282173 CACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTA 282232 || | || | | || || || || ||||| ||||| | ||| | ||| || Sbjct 886 CAGAAATCGACTAATCTGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTGTCCATTTGTG 827 Query 282233 GCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCA 282292 || | |||| || | || || || | || ||| || | ||||| ||| |||||| Sbjct 826 GCCTTCACTTCAAAGATACCCTCCTCGATAGTCAATAGGGATACATCGAAGGTACCACCA 767 Query 282293 CCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT-TTATCAAGACCATACGC 282351 || | ||||||||| || |||||| | || || | || ||| || || | ||| || || Sbjct 766 CCTAAATCAAAAATGAGCACATTCTTCTC-TTATGATGATTTCTTGTCTAAACCGTAGGC 708 Query 282352 AAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCC 282411 || || ||||| || || |||||||| || | | ||| || | ||||| ||| | || Sbjct 707 AATTGCGGCAGCTGTGGGCTCATTAATGATACGGAGAACGTTCATACCAGAAATGGTACC 648 Query 282412 TGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 ||||| ||||| |||||||| | ||| || || ||||| || || ||||| ||||| || Sbjct 647 AGCATCCTTAGTAGCTTGTCTCTATGAGTCATTGAAATAAGCGGGCACAGTGATAACAGC 588 Query 282472 ATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCAT-TTTACTTAAAATCA 282530 || | | | | || || ||| || || ||| ||||| ||||| || | || Sbjct 587 ATTTTTAATTGGCTTGGAAAGATATGCCTCAGCAATTTCCTTCATCTTTAC-TAGGACCA 529 Query 282531 TTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAAT 282590 | || || |||| || | | | | ||| || ||| | || || | | | Sbjct 528 TGGAGGAGATTTCCTCAGCCTAGAACTTCTTCGACTCACCCTTGTACTGCACAACGATAA 469 Query 282591 ATGGTTTATTACC--AACATTAAT-AACTTTAAATGGCCAATATTTCATATCTGATTGAA 282647 ||| || | || || | | ||| || |||||||| | || | || ||| | Sbjct 468 CTGGCTTGTCTCCTGCACCTGCCTCAACCTTGAATGGCCAGTGCTTTAAGTCCTCTTGTA 409 Query 282648 CACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTG 282707 | | ||| | || | |||||| || |||| ||||||||| | | ||| || | | Sbjct 408 CTTGCTTCTCAGTGAATTTTCTACCGATCAATCTCTTTGCATCATAGACAGTGTTCTTGG 349 Query 282708 GATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATG 282767 | || |||| |||||| || || ||||| || || ||| | || || || |||| Sbjct 348 GGTTTCTTGCAACTTGATTCTTAGCGGCATCACCGATTAGACGCTCCTCTTCAGTGAATG 289 Query 282768 AAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCAT 282827 |||||||||||| || ||| |||||||||||||| | |||||||| |||||| ||| Sbjct 288 CAACATATGATGGTGTGGTGTTGTTACCTTGATCATTTGGGATAATTTCTACTTTATCAT 229 Query 282828 TTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 ||| |||||||||||| || | ||||| |||||||| || || || || Sbjct 228 TTTACCATACACCTACGCATGAGTAGGTTGTACCTAAATCGATTCCGATTGC 177 >seq6685 Length=2124 Score = 123 bits (136), Expect = 2e-22 Identities = 367/554 (66%), Gaps = 19/554 (3%) Strand=Plus/Plus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 ||| |||| || || |||| || ||||| |||||||||||||||| | || | Sbjct 1370 TTTGTCAAACCCGTATGCAATTGCTGCAGCTGTTGGTTCATTAATAAAATGAAGTACTTC 1429 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 |||||||||| | |||||| |||||||||| || | |||||| | ||||| | Sbjct 1430 TAGACCAGCAAGCATGGCTGCATTCTTAGTGGCTTACCTCTATGAATCATCGAAATAAGT 1489 Query 282454 AGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCT-TGCTGTTTGTT 282512 || |||||||| || |||| | | |||||||| ||||||| | | || || | | | Sbjct 1490 TGGCACAGTAATGACTGCATATCTCACTTCTTTGCCAATAT-ATCTCTCAGCATTCTCCT 1548 Query 282513 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGA----AT-ATTGCTTGGATTC 282567 | | || ||| | ||| | || ||||| ||||||||| || ||| ||| ||| Sbjct 1549 TTAACGTAATTATTAACATAGCTGTAATTTCTTCTGGAGATAGGATAATTTCTT--TTTC 1606 Query 282568 ATTTTGATATGATACTTC-AAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCC 282626 ||||||| || || ||| || ||| ||| | || || || | | | | ||| Sbjct 1607 ATTTTGA-ATTTTAATTCTAATATAAGGTCTCCCTCCTTTGTTTATTATATCATAAGGCA 1665 Query 282627 AATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 282686 | || || | || |||||| || |||| || ||| | ||||||| || ||| Sbjct 1666 ACTAATTTAGGGCTCTTTGAACCTCTTTATCATCGAATTCTTTCCCAATTAGTCTTTTGA 1725 Query 282687 CATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCA 282746 |||||| || || || |||| | | | ||||||| || || || |||| || Sbjct 1726 AATCAAAGATTGTGTTCTTTGGCCTTATTATTGCTTGATTCTTAGCAATCTCACCAA-CA 1784 Query 282747 GATGTTCTGTCTCT-GTAAATGAAACATATGATGGAGTTGTGCGATTACC---TTGATCA 282802 | || || || ||||| | | ||||||||||| | | | |||||| || |||| Sbjct 1785 TGTACTCCTTCACTGGTAAACAATAGATATGATGGAGATATTCTATTACCGAATTTATCA 1844 Query 282803 TTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCT 282862 | |||| |||| ||| | || | || ||| ||| || || | | | ||||| Sbjct 1845 ---GGAATATTTTCTACTCTGCCTTATTTGTATATACCCACGGAAGAATATTTAGTTCCC 1901 Query 282863 AAATCAATACCAAT 282876 ||||||||||| || Sbjct 1902 AAATCAATACCTAT 1915 >seq9125 Length=2141 Score = 100 bits (110), Expect = 2e-15 Identities = 358/551 (65%), Gaps = 13/551 (2%) Strand=Plus/Minus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 ||| |||| || || |||| || ||||| |||||||||||||||| | | || | Sbjct 767 TTTGTCAAACCCGTATGCAATTGCTGCAGCGGTTGGTTCATTAATAAAGTTAATTACTTC 708 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 |||||||||| | |||||| ||||| |||| || | |||||| | ||||| | Sbjct 707 TAGACCAGCAAGCATGGCTGCATTCTTAGTAGCTTACCTCTATGAATCATCGAAATAAGT 648 Query 282454 AGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTT-TGTT 282512 || |||||||| | |||| | | |||||||| || |||| | | || ||| | | Sbjct 647 TGGCACAGTAATGAATGCATATCTCACTTCTTTGCCGATAT-ATCTCTCAGAGTTCTCCT 589 Query 282513 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGA-----ATATTGCTTGGATTC 282567 | | || ||| | ||| | || || | ||| ||||| ||| ||| || Sbjct 588 TTAACGTAATTAGTAACATAGCTGTAACATCTTCGGGAGATAGGCTAATTTCTT--TATC 531 Query 282568 ATTTTG-ATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCC 282626 |||||| || ||| | || || ||| ||||| || | || | | | | ||| Sbjct 530 ATTTTGAATTTGA-ATTTTAATATAAGGTTTCCCTCCTTTGCTTATTATATCATAAGGCA 472 Query 282627 AATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTG 282686 | ||||| | || |||||| |||| || ||| ||||||||| || ||| Sbjct 471 ACTATTTTAGGGCTCTTTGAACCTCCATATCATCGAATTCTTTACCAATTAGTCTTTTAA 412 Query 282687 CATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCA 282746 || |||| || || || |||| | | | ||||||| || || || |||| || Sbjct 411 CACCAAAGATTGTGTTCTTTGGCCTTATTATTGCTTGATTCTTAGCAATCTCACCAA-CA 353 Query 282747 GATGTTCTGTCTCT-GTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTC 282805 | ||| || || |||| | | ||||||||||||| | | ||| || |||| Sbjct 352 TGTATTCCTTCACTGGTAATTAATACATATGATGGAGAGATTCTATTTCCGAATTCATCA 293 Query 282806 GCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAA 282865 | |||| |||| ||| | || | || ||| ||| || || | | || ||||| ||| Sbjct 292 GGAATATTTTCTACTCTGCCTTATTTGTATATACCAACGGAAGAATATGTAGTTCCCAAA 233 Query 282866 TCAATACCAAT 282876 |||||||| || Sbjct 232 TCAATACCTAT 222 >seq5058 Length=2201 Score = 100 bits (110), Expect = 2e-15 Identities = 142/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 ||||| ||| |||||||||| ||||| | | | ||| | || |||| || Sbjct 825 ACATCGAAGGTACCACCACCCAAGTCAAACACGATAATGTTCTTCTCAC---CTTGCTTC 769 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || | || || |||| ||||||||| || || ||||| ||||| | ||||| | Sbjct 768 TTGTCCATGCCGTAGGCAATAGCAGCAGCGGTGGGCTCATTGATAATACGTAAAACGTCG 709 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||||||||||| || ||||| |||||||| | |||| |||||| || ||||| || Sbjct 708 AGACCAGCAATGAGGCCAGCATCCTTAGTGGCCTACCTTTATGAATCATTGAAATAAGCT 649 Query 282455 GGAACAGTAATAACGGCAT 282473 || || ||||| || |||| Sbjct 648 GGGACGGTAATGACTGCAT 630 >seq11755 Length=1720 Score = 95.1 bits (104), Expect = 9e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 1078931 CCATCCAAAATGATCATGAGCAATATCTACAGTGTGAACATACCAATTTTCATTATaaaa 1078990 ||| |||||||||||||||||||| |||| ||| | |||||||| ||||||||||| Sbjct 1090 CCACCCAAAATGATCATGAGCAATGTCTATAGTCCTTAAATACCAATCCTCATTATAAAA 1031 Query 1078991 aaaaTCAACAATATATATCAATTGTAAAATAATAACAAGAATCATTGAATTAGAAACGTA 1079050 || || || | |||| ||| ||| || ||| | || | | ||| ||||||| ||||| Sbjct 1030 GAAGTCTACTACATATGTCATTTGGAATATATTCACTAACACCATAGAATTAGTTACGTA 971 Query 1079051 TCCAAAATTTTCGTA 1079065 || | | |||||| Sbjct 970 CCCGATCTCTTCGTA 956 >seq6871 Length=5731 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 ||||| || | |||||||||||||| || ||||| || ||| || |||| || || Sbjct 3301 CCGTAAGCGATTGCTGCTGCAGTTGGCTCGTTAATAATACGAAGGACTTCTAGGCCAGCT 3360 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 || || ||| ||| |||||||||||||| || ||||| || || ||||| ||||| Sbjct 3361 ATATTGCCAGCATCTTTAGTTGCTTGTCTCTAGGCATCATTGAAGTAGGCTGGCACAGTG 3420 Query 86239 ATAACTGC 86246 || ||||| Sbjct 3421 ATGACTGC 3428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739636505151144