Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3091 100 3e-16 seq3090 95.1 1e-14 seq3089 95.1 1e-14 >seq3091 Length=1223 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | ||||| | || || ||||||||||| ||||||||||| |||| Sbjct 299 TGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGAGGGATACCTTCCTTGTCTTGGATC 240 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| ||||| | ||||| ||||| | || | ||| || ||| Sbjct 239 TTAGCCTTGACGTTCTCAATGGTGTCTGATGGCTCTACGTCCAATGTAATGGTCTTACCG 180 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGGCTTATTT 133669 || | || || |||||||||| |||| || ||| Sbjct 179 GTTAAGGTCTTAACGAAAATCTACATGTTTTGTTT 145 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || ||||| || || |||||||| || | | || || ||||| Sbjct 815 AAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTTCCATCTTCGAGT 756 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| ||||||| | || || ||||| || || ||||||||||| |||| Sbjct 755 TGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTGTCCTAGATC 696 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||| | ||| || || || | |||| ||| || || Sbjct 695 TTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTGATGGTCTTTCCA 636 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||| ||||| || ||||| Sbjct 635 GTCAAAGTTTTGACGAAGATTTGCAT 610 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| |||| || ||||| |||| || || || || || Sbjct 587 AAGTGGAGGGTTGACTCCTTCTAGATGTTGTAGTCGCTCAAGGTTCTGCCATCTTCAAGT 528 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || || | ||||| | || || ||||| |||||||||||||| || |||| Sbjct 527 TGTTTTCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGGATGCCTTCCTTATCTTGGATC 468 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | ||||| ||||| | || || ||||||| |||| ||| ||||| Sbjct 467 TTGGCCTTCACGTTCTCAATAGTGTCTGATGGTTCAACGTCGAGAGTGATGGTCTTGCCA 408 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| || | ||| Sbjct 407 GTGAGGGTCTTAACGAAGATTTACAT 382 >seq3090 Length=995 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| |||| || ||||| |||| || || || || || Sbjct 359 AAGTGGAGGGTTGACTCCTTCTAGATGTTGTAGTCGCTCAAGGTTCTGCCATCTTCAAGT 300 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || || | ||||| | || || ||||| ||||||||||||||||| |||| Sbjct 299 TGTTTTCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGGATGCCTTCCTTGTCTTGGATC 240 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| ||||| | ||||| ||||| | || | ||| || ||| Sbjct 239 TTAGCCTTGACGTTCTCAATGGTGTCTGATGGCTCTACGTCCAATGTAATGGTCTTACCG 180 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGGCTTATTT 133669 || | || || |||||||||| |||| || ||| Sbjct 179 GTTAAGGTCTTAACGAAAATCTACATGTTTTGTTT 145 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || ||||| || || |||||||| || | | || || ||||| Sbjct 587 AAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTTCCATCTTCGAGT 528 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| ||||||| | || || ||||| || || ||||||||||| |||| Sbjct 527 TGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTGTCCTAGATC 468 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||| | ||| || || || | |||| ||| || || Sbjct 467 TTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTGATGGTCTTTCCA 408 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||| ||||| || ||||| Sbjct 407 GTCAAAGTTTTGACGAAGATTTGCAT 382 >seq3089 Length=958 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| |||| || ||||| |||| || || || || || Sbjct 359 AAGTGGAGGGTTGACTCCTTCTAGATGTTGTAGTCGCTCAAGGTTCTGCCATCTTCAAGT 300 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || || | ||||| | || || ||||| ||||||||||||||||| |||| Sbjct 299 TGTTTTCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGGATGCCTTCCTTGTCTTGGATC 240 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| ||||| | ||||| ||||| | || | ||| || ||| Sbjct 239 TTAGCCTTGACGTTCTCAATGGTGTCTGATGGCTCTACGTCCAATGTAATGGTCTTACCG 180 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGGCTTATTT 133669 || | || || |||||||||| |||| || ||| Sbjct 179 GTTAAGGTCTTAACGAAAATCTACATGTTTTGTTT 145 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || ||||| || || |||||||| || | | || || ||||| Sbjct 587 AAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTTCCATCTTCGAGT 528 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| ||||||| | || || ||||| || || ||||||||||| |||| Sbjct 527 TGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTGTCCTAGATC 468 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||| | ||| || || || | |||| ||| || || Sbjct 467 TTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTGATGGTCTTTCCA 408 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||| ||||| || ||||| Sbjct 407 GTCAAAGTTTTGACGAAGATTTGCAT 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483298470366560