Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq13015 192 1e-43 seq17469 123 6e-23 seq16950 114 3e-20 seq12968 113 1e-19 >seq13015 Length=2880 Score = 192 bits (212), Expect = 1e-43 Identities = 558/847 (66%), Gaps = 19/847 (2%) Strand=Plus/Plus Query 110307 TTTGGTTTCAAAACTCTTGA-ACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGA 110365 ||||| || ||||| | || | || || ||||||| || |||| | ||| |||| Sbjct 716 TTTGGCTTTAAAACCTTAGAGAAGTCCT-ATTTACTCAAAGTTCATGGAAAAATCGTTGA 774 Query 110366 ACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGC 110425 ||| |||||| | ||||| | | || | || || || || | ||||| | || Sbjct 775 ACGACCTCAATAAATGTTGATGAGAGTATCCATAGGAATCCACAAAAATGATGTAAAGAG 834 Query 110426 TGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTAT--TCATGCTACTCCTACC 110483 | ||||||| |||| || || | || | | || | | | |||||| |||||||| Sbjct 835 AGCTATTGAAACTTATCATTTAAT--GTCAGATAAATGGTTTACTCATGCCACTCCTACT 892 Query 110484 CTATTTAACGCAGGAACTAATGGAGG-ACAATTGGCTTCTTGCTTTCTTCTAGGAATTAA 110542 |||| ||| | || || | || | || || |||| || || ||| | || || Sbjct 893 TTATTCAACTCTGGTAC-ACCCAAGCCATAAATGTCTTCATGTTTCCTTTTGACTATGAA 951 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 || ||||| || ||||||| || ||| |||||| | |||||||| | || ||||| Sbjct 952 AGACGATTCAATACAAGGTATCTACGATACTCTTAGACAAACTGCTTTAATATCTAAGTC 1011 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 |||| |||||||| || ||||| ||| | | ||| | |||| | Sbjct 1012 AGCTGGTGGAATTGGACTTTCAATTCATTGTATAAGAGCTTCAGGCTCTTATATTAAAGG 1071 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || || || | ||| | |||||||||||| || ||||| || ||||| | Sbjct 1072 CACTAATGGCTACTCTAATGGCTTAATTCCAATGTTAAAGGTTTTCAATGAAACTGCTAG 1131 Query 110723 ATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 |||||| | ||||||||| || || || || || ||||| || ||||| |||||||| Sbjct 1132 ATATGTTGACCAAGGTGGTGGTAAAAGGAAAGGTTCCTTTGCCATTTATCTAGAACCTTG 1191 Query 110780 GCATTCAGATATATTTGAATT-CTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA 110838 |||| | ||| | || || || |||| | | || || || || || ||| ||| Sbjct 1192 GCATGCTGATGTTTTCGATTTTCTTATGATGAAG-AAGAACCACGGTAAAGAGGAATAAA 1250 Query 110839 GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAG 110898 |||| | ||| | |||||||| | ||| | ||||| |||| ||||| | || | Sbjct 1251 GAGCTAGAGATCTCTTTTATGCTTTATGGGTGCCAGATCTATTTATGAATAGAGTGAAGT 1310 Query 110899 AAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATG 110958 ||||| ||| | ||| | |||||| || | || || || ||||| | || Sbjct 1311 CTAATGGAGATTGGACACTTTTCTGTCCTAATGAGGCACCCGGCTTACAAGATGTTTTTG 1370 Query 110959 GAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAA- 111017 || | || |||||| | ||||| ||||| ||||| |||||||||||| ||||| || Sbjct 1371 GAGAGGAATTTGAAAAGCTTTATGAAAAGTATGAGAAAGAAGGCAAG---GGCAAAAAAG 1427 Query 111018 --ATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTC 111075 || ||| || |||||||| || ||||||| ||| |||||||| |||| Sbjct 1428 TTATCAAAGCCTAAAAACTTTGGGAAGCTATTATTGAATCTCAACAAGAAACTGGCACTC 1487 Query 111076 CTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAA 111135 | || || | ||||||||| ||| ||||| || || | ||||||| |||| Sbjct 1488 CATACATGCTCTATAAAGATGCGTGCAATAAAAAATCAAACTAATAGCATTTAGGTACAA 1547 Query 111136 TTAAGTC 111142 | || || Sbjct 1548 TAAAATC 1554 >seq17469 Length=8276 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||||| || || |||| | || | ||||||||||| || ||| ||||||| ||| Sbjct 4342 AGACATTTAAAAGATGATGACTATGTGATTTTCAATAGGCAGCCTTCATTGCATAAGATG 4401 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 ||| | |||| ||||| ||| ||||| || | | |||||| |||| ||| | ||| Sbjct 4402 TCTCTCATGGGTCATAGAGTTAAAGTTTTGCCACATTCAACATTTAGATTGAATTTGAGT 4461 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | || || ||||| || || |||||||| ||||||||||| |||||||| || ||| Sbjct 4462 GTAACCACACCATATAACGCTGACTTTGATGGTGATGAAATGAACATGCATGTGCCACAA 4521 Query 305486 TCAAAGGTTACAATGACTGAA 305506 || | | || ||| ||||| Sbjct 4522 TCTTATGAGACCATGGCTGAA 4542 >seq16950 Length=5385 Score = 114 bits (126), Expect = 3e-20 Identities = 149/204 (73%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 305317 TGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGC 305376 |||||||||| ||| || ||||| | || || ||||||||||| || |||| Sbjct 4040 TGACAATGATATTGTTTGCTTTAATAGATAGCCTTCTTTGCATAAAATGAGCATTATGGG 3981 Query 305377 TCATAAAGTCAAAGTATTATC--TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACG 305434 || ||||| |||||| || | | || || ||| ||||||| | || | ||| Sbjct 3980 GCACAAAGTGAAAGTACTACCATTTCAT--ACTTTTAGATTAAACTTGTCTGTTACTACA 3923 Query 305435 CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGGTT 305494 ||||||||||| ||||||||||| ||||||||||||||| ||| ||| ||||| | | Sbjct 3922 CCTTATAATGCTGATTTTGATGGTGATGAAATGAATATGTTTGTCCCTTAATCATATGAG 3863 Query 305495 ACAATGACTGAATTATCAGAAATA 305518 || ||| ||||| || ||||||| Sbjct 3862 ACTATGGCTGAAGTAAAAGAAATA 3839 >seq12968 Length=2778 Score = 113 bits (124), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 14/228 (6%) Strand=Plus/Minus Query 131797 TAAAAAGAAAGCAGAATGGGCTATTAAATGGAT----TCAAGATGATTCCGCTAATTTTT 131852 ||||||| || |||||||| | |||||||| ||| ||| ||||| | | Sbjct 654 TAAAAAG---GCCGAATGGGCCTTAAAATGGATAGGCTCA-GATAATTCC------TATG 605 Query 131853 CTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTG 131912 | |||| | ||||| || ||| | |||||||||| || || ||||| | ||||||| Sbjct 604 CCGAAAGATTAGTAGCATTCGCTGCTATTGAAGGTATCTTTTTCTCAGGCTCATTCTGTG 545 Query 131913 CTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCA 131972 ||||||| ||| | |||||||| ||||| |||||||| || |||| ||| || ||| Sbjct 544 CTATCTTCTGGATGAAGAAGCGCGGATTAATGCCTGGTCTGACATTCAGTAATGAACTCA 485 Query 131973 TCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATA 132020 | |||||||||| |||| ||||| ||||| ||| |||||| Sbjct 484 TAAGCAGAGATGAAGGCATGCACACTGATTTTGCATGTTTACTCTATA 437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186504968946484