Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3091 114 3e-20 seq3090 89.7 1e-12 seq3089 89.7 1e-12 seq14708 84.2 5e-11 seq11541 84.2 5e-11 >seq3091 Length=1223 Score = 114 bits (126), Expect = 3e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||| || || || |||||||| |||||||| || ||| Sbjct 238 AAGATCCAAGACAAGGAAGGTATCCCTCCCGATCAACAAAGACTCATCTTCGCTGGCAAG 297 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| || || | ||||||||||| || |||| ||||||||||| || Sbjct 298 CAATTGGAAGATGGCAGAACCCTCTCCGATTACAACATCTAGAAGGAGTCTACTCTCCAT 357 Query 206374 CTTGTTTTGAGACTTCGA 206391 || |||||||||||| || Sbjct 358 CTAGTTTTGAGACTTAGA 375 Score = 89.7 bits (98), Expect = 1e-12 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || ||||| || |||||| | || || ||| || ||||| ||||| Sbjct 624 CAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCAGACACCATCGAAAA 683 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| | || || ||||| ||| || || |||||||| || || Sbjct 684 CGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAACAAAGACTCATTTT 743 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| ||||| || | ||||||||||| ||| | || ||||| |||| || ||||| Sbjct 744 CGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAATATCCAAAAGGAGTC 803 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 |||||| || | ||| | ||| Sbjct 804 TACTCTCCATTTGGTTCTCAGA 825 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || |||||||||||| || || ||||||||||| |||| || || || || | | || Sbjct 375 TCTAAGTCTCAAAACTAGATGGAGAGTAGACTCCTTCTAGATGTTGTAATCGGAGAGGGT 316 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || |||||||||| ||||| || |||||||| || | ||||||| Sbjct 315 TCTGCCATCTTCCAATTGCTTGCCAGCGAAGATGAGTCTTTGTTGA 270 Score = 84.2 bits (92), Expect = 5e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || || || || || || ||||| | |||||||| |||||| Sbjct 922 AAGATTCAAGATAAGGAGGGTATCCCACCCGATCAATAAAGATTGATCTTCGCAGGAAAG 981 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || |||||||||||||| ||| | |||| || ||| |||| || ||||| ||||| || Sbjct 982 CAATTGGAAGATGGAAGAACTCTATCCGACTATAACATCCAAAAGGAGTCAACTCTCCA 1040 >seq3090 Length=995 Score = 89.7 bits (98), Expect = 1e-12 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || ||||| || |||||| | || || ||| || ||||| ||||| Sbjct 396 CAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCAGACACCATCGAAAA 455 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| | || || ||||| ||| || || |||||||| || || Sbjct 456 CGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAACAAAGACTCATTTT 515 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| ||||| || | ||||||||||| ||| | || ||||| |||| || ||||| Sbjct 516 CGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAATATCCAAAAGGAGTC 575 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 |||||| || | ||| | ||| Sbjct 576 TACTCTCCATTTGGTTCTCAGA 597 Score = 84.2 bits (92), Expect = 5e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || || || || || || ||||| | |||||||| |||||| Sbjct 694 AAGATTCAAGATAAGGAGGGTATCCCACCCGATCAATAAAGATTGATCTTCGCAGGAAAG 753 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || |||||||||||||| ||| | |||| || ||| |||| || ||||| ||||| || Sbjct 754 CAATTGGAAGATGGAAGAACTCTATCCGACTATAACATCCAAAAGGAGTCAACTCTCCA 812 >seq3089 Length=958 Score = 89.7 bits (98), Expect = 1e-12 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || ||||| || |||||| | || || ||| || ||||| ||||| Sbjct 396 CAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCAGACACCATCGAAAA 455 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| | || || ||||| ||| || || |||||||| || || Sbjct 456 CGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAACAAAGACTCATTTT 515 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| ||||| || | ||||||||||| ||| | || ||||| |||| || ||||| Sbjct 516 CGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAATATCCAAAAGGAGTC 575 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 |||||| || | ||| | ||| Sbjct 576 TACTCTCCATTTGGTTCTCAGA 597 >seq14708 Length=579 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/205 (70%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || || || ||||| || || || || || | || Sbjct 20 AAAACTCTTACTGGAAAGACCATTACCTTGGACGTAGAGCCATCAGATACCATTGAGAAT 79 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA---AGACTTAT 206300 || |||||||| ||| | || |||||||| ||| || || |||| ||||| || Sbjct 80 GTGAAAGCAAA-GATCTAGGACAAAGAAGGTATTCCACCTGA---TCAATAGAGACTCAT 135 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 ||||| || || ||||| ||||||||||| || || | || |||||| || | ||||| Sbjct 136 ATTCGCTGGTAAACAGTTAGAAGATGGAAGAACATTATCAGACTACAACATCTAAAAAGA 195 Query 206361 GTCTACTCTTCACCTTGTTTTGAGA 206385 ||||| | ||| | || |||||| Sbjct 196 ATCTACATTACACTTAGTCTTGAGA 220 >seq11541 Length=746 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/205 (70%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| ||||| || || || || || || ||| | ||| Sbjct 170 AAAACACTCACTGGCAAAACTATCACCTTAGATGTTGAGCCCTCAGATACAATTGAAAAC 229 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA---AGACTTAT 206300 || ||||| || |||| | || || || || || || || |||| ||||| || Sbjct 230 GTCAAAGCTAA-GATTTAGGACAAGGAGGGCATCCCACCCGA---TCAATAGAGACTCAT 285 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 ||||| ||||| ||| | ||||||||||| || || | || |||||| || | ||||| Sbjct 286 ATTCGCTGGAAAACAGCTAGAAGATGGAAGAACATTATCAGACTACAACATCTAAAAAGA 345 Query 206361 GTCTACTCTTCACCTTGTTTTGAGA 206385 ||||| | ||| | || |||||| Sbjct 346 ATCTACATTACACTTAGTCTTGAGA 370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181514263752724