Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq14708 116 3e-21 seq11541 105 5e-18 seq3088 93.3 3e-14 >seq14708 Length=579 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||| | || || |||||||| | ||||| |||||||||||| |||| ||| || Sbjct 5 ATGTAGATCTTCGTTAAAACTCTTACTGGAAAGACCATTACCTTGGACGTAGAGCCATCA 64 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | |||||| ||| || ||||||||||| | || ||||||| Sbjct 65 GATACCATTGAGAATGTGAAAGCAAAGATCTAGGACAAAGAAGGTATTCCACCTGATCAA 124 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 | || || || | || || ||||| ||||||||| | ||| | || |||||| Sbjct 125 TAGAGACTCATATTCGCTGGTAAACAGTTAGAAGATGGAAGAACATTATCAGACTACAAC 184 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || |||||||||||||| |||| ||||| ||||| ||| ||||||| Sbjct 185 ATCTAAAAAGAATCTACATTACACTTAGTCTTGAGATTAAGAGGAGG 231 >seq11541 Length=746 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 ||||||| ||||||| ||||||||| | |||||||| || || ||| | || || || Sbjct 151 AAAAATGTAAATTTTCGTTAAAACACTCACTGGCAAAACTATCACCTTAGATGTTGAGCC 210 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 | ||| | ||| | || ||| || ||| ||||| || ||| | || || Sbjct 211 CTCAGATACAATTGAAAACGTCAAAGCTAAGATTTAGGACAAGGAGGGCATCCCACCCGA 270 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTA 106435 |||| | || || || | || || ||||| |||||||| | ||| | || || Sbjct 271 TCAATAGAGACTCATATTCGCTGGAAAACAGCTAGAAGATGGAAGAACATTATCAGACTA 330 Query 106436 CAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 |||||| |||||||||||||| |||| ||||| ||||| ||| ||||||| Sbjct 331 CAACATCTAAAAAGAATCTACATTACACTTAGTCTTGAGATTAAGAGGAGG 381 >seq3088 Length=519 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 ||||||| ||||||| ||||||||| | |||||||| || || ||| | || || || Sbjct 152 AAAAATGTAAATTTTCGTTAAAACACTCACTGGCAAAACTATCACCTTAGATGTTGAGCC 211 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 | ||| | ||| | |||||| || ||| |||||||| ||| | || || Sbjct 212 CTCAGATACAATTGAAAACGTGAAAGCTAAGATTTAGGACAAAGAGGGCATCCCACCCGA 271 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTA 106435 |||| |||| | || | ||| || ||| | | |||||| | |||| | || || Sbjct 272 TCAATAAAGATTGATCTTTGCAGGAAAATAGCTTGAAGATGGAAGAACTTTATCTGACTA 331 Query 106436 CAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||||| || || ||||| || | ||||||||||| || || ||||||| Sbjct 332 TAACATTCAGAAGGAATCAACCTTGCATTTAGTATTAAGATTGAGAGGAGG 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402230335732352