Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq13015 275 9e-69 seq12968 232 9e-56 >seq13015 Length=2880 Score = 275 bits (304), Expect = 9e-69 Identities = 991/1522 (65%), Gaps = 51/1522 (3%) Strand=Plus/Minus Query 68693 CTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAA 68752 |||| | ||||| || ||||| | ||| || |||| || || || | ||||| | Sbjct 2216 CTCTCACTAGATGTGGGTTAACGCATACAAACTCACCAGCCAATACCCTTCTTGTGTAGA 2157 Query 68753 TATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAG 68812 ||| |||| || ||||| | |||||||| || || | ||||| | ||||||||||| Sbjct 2156 CATTGGTGGTGTAGGGTTCAAAGGATTCATTGTTCCCTAATATTTGTGAAGTTGATGCAG 2097 Query 68813 TTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTA 68872 |||||||||| || || | | | || | ||| ||| || | || | | ||| Sbjct 2096 TTGGCATAGGAGCAACTAGGAGAGAGTTACGGGCACCGTGTTACATAACTTCCTATCTTA 2037 Query 68873 GATGTTT-CCAATC---CCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGA 68928 | ||||| |||||| || | | | ||| | ||||||| ||||| ||| ||| Sbjct 2036 G-TGTTTACCAATCATACCTTGTAGTATAAGGTTCTTCATTCCATAGATCAAATT--AGA 1980 Query 68929 ATT--CCGTTACT---TGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAG 68983 ||| || ||||| || | || || | ||||||||||||| || || | || || Sbjct 1979 ATTTTCCTTTACTGAGTGGA---GAACCTTAGAATGTTTCATAAGGGCCCTCTTCTTTAG 1923 Query 68984 CTAGTTCACAACTTGCCTCTA--AT-GCACCGTAATAAATTGTTTCGAAAATCTTCTTAT 69040 |||||| | ||| || | || | | | | |||||| || || || |||||||| | Sbjct 1922 CTAGTTGAA---TTGATTCAAGCATCGAAGCATGATAAATGGTCTCAAATATCTTCTTGT 1866 Query 69041 TGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATA-AATGCATCTGCC 69099 | | ||| ||||| || |||| | ||| | | | || || | ||| || Sbjct 1865 TCAAATCAGCAGCTTCATCTGATTCAAATGCA-AATTTCAGTAATTAGAAAGTATCAGCT 1807 Query 69100 AATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGA 69159 | ||||| ||| || ||||| |||||||| || | ||| || |||| |||||| Sbjct 1806 AGTCCCTAAACACCTATACCAATAGGTCTGTGACGGAGATTAGATTTTTCGGCTTCTTCT 1747 Query 69160 ATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACG 69219 | || || | || | ||| || || || || | ||| || || ||| | ||| Sbjct 1746 ACTGGGTAGAAGTTGACATCAATGATCTTGTTTAAATTGCGAGTTATTACACGAGTCACT 1687 Query 69220 TCCTTTAGTTTGAGAAAATCAAA--TCGTCCAT-CTATA---ACAAACATATTCAGTGCT 69273 || | ||| | | ||||||| || | || || | ||| | || || | | Sbjct 1686 TCATGGAGTCTTTCATAATCAAAGGTCTACGATTCTTTGTTCACATATCTAGGAAGAGAT 1627 Query 69274 ACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTA 69333 | || || ||||||||||| || | |||| | || |||| | ||| || Sbjct 1626 ATTGAGGCGAGATTACAAACAGCAATTTCATCTGGGGATGTGTATTCGACTATTTCACAG 1567 Query 69334 CATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCT----TTTTGTTACA 69389 || || || |||| || || || | || ||| |||| | | |||| || || Sbjct 1566 CAAAGGTTGGATGATTTTATTGTACCTAAAT---GCT-ATTAGTTTGATTTTTTATTGCA 1511 Query 69390 GGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTT 69449 || || || || || || | ||||| |||||||| |||||||| ||||||| || Sbjct 1510 CGCATCTTTATAGAGCATGTATGGAGTGCCAGTTTCTTGTTGAGATTCAATAATAGCTTC 1451 Query 69450 CCAAACGACCCTAGCATTT-ATTACGGTCTTGTAACGCTTC---TCTTTTTCATATTGTG 69505 ||||| | ||| ||| || || | ||| | ||| ||||| ||||| | | Sbjct 1450 CCAAA-GTTTTTAGGCTTTGATAACTTTTTTG---CCCTTGCCTTCTTTCTCATACTTTT 1395 Query 69506 TATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGAC 69565 ||| ||| ||| ||||| ||||| ||||||| | || || || ||||| |||| Sbjct 1394 CATAAAGCTTTTCAAATTCCTCTCCAAAAACATCTTGTAAGCCGGGTGCCTCATTAGGAC 1335 Query 69566 ACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAA 69625 | | | || ||| | ||| | ||| |||| |||||||||||||| || | ||| | Sbjct 1334 AGAAAAGTGTCCAATCTCCATTAGACTTCACTCTATTCATAAATAGATCTGGCACCCATA 1275 Query 69626 GAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC-TGTAttttttttAAGATCG 69684 ||| |||||||||||| | ||| | ||| || || || || | || || | || Sbjct 1274 AAGCATAAAAGAGATCTCTAGCTCTTTATTCCTCTTTACCGTGGTTCTTCTTCATCATA- 1216 Query 69685 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGT 69744 ||||| || | || ||||| |||||| ||||||||||| || || | | || | | Sbjct 1215 AGAAAATCGAAAACATCAGCATGCCAAGGTTCTAGATAAATGGCAAAGGAACCTTTCCTT 1156 Query 69745 TTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATA 69804 ||| || || || || | ||||| ||||| | ||| | || | | ||| ||||| Sbjct 1155 TTACCACCACCTTGGTCAACATATCTAGCAGTTTCATTGAAAACCTTTAACATTGGAATT 1096 Query 69805 ATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTA 69864 | |||||||| | ||||| || || ||||||| ||| || | ||| | | Sbjct 1095 AAGCCATTAGAGTAGCCATTAGTGCCTTTAATATAAGAGCCTGAAGCTCTTATACAATGA 1036 Query 69865 ATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCA 69924 || || || || ||||| || || ||||| |||| |||| || | | || || Sbjct 1035 ATTGAAAGTCCAATTCCACCAGCTGACTTAGATATTAAAGCAGTTTGTCTAAGAGTATCG 976 Query 69925 TATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATG- 69983 || ||||| | ||| ||| ||| |||| | | ||| ||||| |||||||| ||| Sbjct 975 TAGATACCTTGTATTGAATCGTCTTTCATAGTCAAAAGGAAACATGAAGACATTT-ATGG 917 Query 69984 -ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAA 70042 || | || || | || ||||| ||||||| || ||||| |||||||| || || | Sbjct 916 CTTGGGT-GTACCAGAGTTGAATAAAGTAGGAGTGGCATGAGTAAACCATTTATCTGACA 858 Query 70043 GCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACAC 70102 | || || |||||||||||| | || ||| | || |||||||| | || | Sbjct 857 TTAAATGATAAGTTTCAATAGCTCTCTTTACATCATTTTTGTGGATTCCTATGGATACTC 798 Query 70103 GCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATT 70162 ||||||||| | ||||||||||| || |||| || | ||| | | || || | Sbjct 797 TCATCAACATTTATTGAGGTCGTTCAACGATTTTTCCATGAACTTTGAGTAAATAGGACT 738 Query 70163 TTTCCAGAGTTTTAAACCCAAA 70184 | || | |||||||| ||||| Sbjct 737 TCTCTAAGGTTTTAAAGCCAAA 716 >seq12968 Length=2778 Score = 232 bits (256), Expect = 9e-56 Identities = 585/887 (66%), Gaps = 2/887 (0%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 |||| ||||| || || | ||||| || || || || |||||| | ||| || || Sbjct 157 TTTTAATATTCCCCGACTCTCTTCTCAAAGAAGTTTGTCTTGCCTGGTAGTGAAATCATT 216 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| | ||||| ||||| |||| || | || | |||||| | | | Sbjct 217 TCCATCCACTCAAATGGATTTAACACATTGTAGTACTTAGGTACTCCTAAAGCAAAGAGT 276 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 | |||||| || ||||||| ||| ||| ||| | | | ||||||| || || ||| Sbjct 277 AGTCTATCAGCCACAAATTATATATATTGAGCCATTAAGTTAGAATTCATACCAATAAGT 336 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 | |||||| ||||| || ||||||| ||| || | ||| || | || || ||| Sbjct 337 TCAACTGGGAGAGCTGAGCATACAAACTCTAATTCAATTTATACAGCATTTGAAATAATC 396 Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAG 39625 | | |||| | || ||| |||||| | | ||| || || || Sbjct 397 TCCAAAATTCTTTCATTAGATATCTTATTATTTAAGTGTTTATAGAGTAAACATGCAAAA 456 Query 39626 TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATT 39685 ||| || | ||| |||||||| || || | ||| ||| ||||| || ||||||||| Sbjct 457 TCAGTGTGCATGCCTTCATCTCTGCTTATGAGTTCATTACTGAATGTCAGACCAGGCATT 516 Query 39686 AGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCT 39745 | || ||||| || | ||| || || ||| || || || || || ||||| ||||| Sbjct 517 AATCCGCGCTTCTTCATCCAGAAGATAGCACAGAATGAGCCTGAGAAAAAGATACCTTCA 576 Query 39746 ACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTTCTGT 39805 | || || ||||| || | ||| || | || |||| |||||| || Sbjct 577 ATAGCAGCGAATGCTACTAATCTTTCGGCATAGGAATTATCTGAGCCTATCCATTTTAAG 636 Query 39806 GCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT-ATAGCATTAAAGAGATAATG 39864 ||||| || || || || ||| || || |||| | || || ||||| || | | Sbjct 637 GCCCATTCGGCCTTTTTAGCAACAACCGGAAT-GTTTGTGATTGCTTTAAAAAGGAAGTC 695 Query 39865 TTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGAT 39924 ||| || | ||| | | || ||||| || | ||| || | ||||| || || Sbjct 696 TTTATCTTATGGATCAGTGATGTAGGTATCAATGAGAAGAGAGTAGGTCTCTGAGTGAAT 755 Query 39925 GTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGA 39984 ||| || ||| ||| | |||||||||||| ||||| || |||| ||||| | || | Sbjct 756 GTTCTCCATCATCATTTAAAATCCGTAAAAGCATCTAGCCTCAGGAATTTAGATTTCAGT 815 Query 39985 ACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAA 40044 || || |||| |||||||| ||| ||||||||||||||||| || ||||| || | Sbjct 816 GCAGAACCTTTAAGCCAAATTCTCAAGAACTATTCCATCACTAGCAGCGAAAAAGGCAAG 875 Query 40045 TACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTT 40104 ||||| |||||||| | ||||||| | | | ||| | |||||| || | ||| | Sbjct 876 AACATGCTTAATAAAGTGTTTTTCACCATCGTTGAGTTTTTCCCAGTCTTTAACATCAGT 935 Query 40105 TGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCA 40164 | || |||| ||| ||||| ||||| || | ||| | | ||||||||| ||||| Sbjct 936 AGCTAAGTCTATTTCCTCAGCAGTCCAGAAGCAAGCCATTTAATCTTTGTACATCTTCCA 995 Query 40165 TATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211 ||||||| ||| || || || || ||||| | || ||||||| Sbjct 996 TATATCATTGTATCTGATGGGTAATATTACAAAGCGGTTAGGATTTT 1042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686734977728160