Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6873 96.9 3e-15 >seq6873 Length=3768 Score = 96.9 bits (106), Expect = 3e-15 Identities = 271/406 (67%), Gaps = 24/406 (6%) Strand=Plus/Plus Query 19314 TGTCATTAAACAATTGGGATGTAAA-CATGTTCGTGGACTTTTGCTTTATGGGCCACCGG 19372 ||| ||| || ||| || ||| || |||||| | || | | |||||||| ||||| | Sbjct 822 TGTAATTGAAAAATATGG-TGTGAAGCATGTTAGAGGTATGCTTCTTTATGGACCACCAG 880 Query 19373 GTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACCT---C 19429 || || ||||| || || || || || || |||| | | ||| || | Sbjct 881 GTACAGGTAAAACTTTGATAGCTCGACAAATTGCTAAAGCATT---AAACTGTGCTGAGC 937 Query 19430 CCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA--TCGGAAGAAAA 19487 | |||||||| |||| |||||||| || |||| ||||| ||| | | |||||||| Sbjct 938 CAAAAATTGTTCATGGACCTGAAATATTCGATAAGTATGTTGGTGGAAGTGAGAAGAAAA 997 Query 19488 TGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTC 19547 | || || ||| ||||||||||| ||| | || |||||| | |||| | || || Sbjct 998 T-TA-GAGATTTATTTGCTGACGCAGAAAATGAGCAAAAA-GAAAAGGGAGATGAA--TC 1052 Query 19548 ---TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCT-- 19602 ||| ||||| ||||| | ||||| | || ||||| |||| | ||||| ||| Sbjct 1053 AGATTTACACATCATAATCTTTGATGAGATTGATGCAATTTGTAGGTCTAGAGGATCTAC 1112 Query 19603 ----GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658 || | | || || ||||| | || || || |||||||| || || |||| || Sbjct 1113 TTAAGGAGGTACAGGTGTCCATGAAGCAGTAGTTAACCAACTCCTATCGAAGATAGATGG 1172 Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGA 19704 |||| || | ||||| || | || || || ||||| || ||| Sbjct 1173 TGTTGACAGCTTAAATAACATCCTTGTCATAGGTATGACCAACAGA 1218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397357938165220