Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3091 131 1e-25 seq3090 131 1e-25 seq3089 131 1e-25 seq13015 82.4 6e-11 >seq3091 Length=1223 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || ||||| ||||||||||| || | | | | |||||| Sbjct 818 ACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTTCCATCTTCG 759 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| || ||| ||||||| | |||||||| || || | ||| || || || | Sbjct 758 AGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTGTCCTAG 699 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | |||| | ||||||| || |||||| || ||||| || | || Sbjct 698 ATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTGATGGTCTTT 639 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| |||||| || |||||||||||| Sbjct 638 CCAGTCAAAGTTTTGACGAAGATTTGCATA 609 Score = 104 bits (114), Expect = 2e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 ||| || || || | || || || || | || ||||||||||||| | | | | || Sbjct 594 CAACACTAAGTGGAGGGTTGACTCCTTCTAGATGTTGTAGTCGCTCAAGGTTCTGCCATC 535 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| || ||||| ||||| | ||||| | |||||||| || || | || || ||||| Sbjct 534 TTCAAGTTGTTTTCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGGATGCCTTCCTTATC 475 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 ||||||| |||| | | || | |||||||| | |||||| || ||||| || | Sbjct 474 TTGGATCTTGGCCTTCACGTTCTCAATAGTGTCTGATGGTTCAACGTCGAGAGTGATGGT 415 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||||| || || || || || ||||||| |||| || || Sbjct 414 CTTGCCAGTGAGGGTCTTAACGAAGATTTACATACCTCCT 375 >seq3090 Length=995 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || ||||| ||||||||||| || | | | | |||||| Sbjct 590 ACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTTCCATCTTCG 531 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| || ||| ||||||| | |||||||| || || | ||| || || || | Sbjct 530 AGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTGTCCTAG 471 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | |||| | ||||||| || |||||| || ||||| || | || Sbjct 470 ATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTGATGGTCTTT 411 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| |||||| || |||||||||||| Sbjct 410 CCAGTCAAAGTTTTGACGAAGATTTGCATA 381 >seq3089 Length=958 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || ||||| ||||||||||| || | | | | |||||| Sbjct 590 ACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTTCCATCTTCG 531 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| || ||| ||||||| | |||||||| || || | ||| || || || | Sbjct 530 AGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTTGTCCTAG 471 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | |||| | ||||||| || |||||| || ||||| || | || Sbjct 470 ATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTGATGGTCTTT 411 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| |||||| || |||||||||||| Sbjct 410 CCAGTCAAAGTTTTGACGAAGATTTGCATA 381 >seq13015 Length=2880 Score = 82.4 bits (90), Expect = 6e-11 Identities = 225/342 (66%), Gaps = 7/342 (2%) Strand=Plus/Minus Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707 |||| |||||||| | ||| ||||||||||| || || || |||||||||||| ||| Sbjct 1305 ACTCTATTCATAAATAGATCTGGCACCCATAAAGCATAAAAGAGATCTCTAGCTCTTTAT 1246 Query 131708 TCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGT 131767 || ||| |||| | || |||| | | ||| || |||| || |||||||| ||| Sbjct 1245 TCCTCTTTACCGTGGTTCTTCTTCATCATAAGAAAATCGAAAACATCAGCATGCCAAGGT 1186 Query 131768 TCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAACC 131824 || | ||| | || | | ||||| | || ||| ||||| | ||||| | | | Sbjct 1185 TCTAGATAAATGGCAAAGGAACCTTTCCTTTTACCACCACCTTGGTCAACATATCTAGCA 1126 Query 131825 ATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTA 131884 | | ||| | || ||||| || || || || | || ||||| |||| ||| Sbjct 1125 GTTTCATTGAAAACCTTTAACATTGGAATTAAGCCATTAGAGTAGCCATTAGTGCCTTTA 1066 Query 131885 ATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTG--AGTCCAATACCTCCGCCGTATT 131942 || || ||| ||||| || |||| ||| |||||||| || || | | | Sbjct 1065 ATATAAGAGCCTGAAGCTCTTATACAATGAA--TTGAAAGTCCAATTCCACCAGCTGACT 1008 Query 131943 TAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTT 131984 |||| |||| || || | ||||| | |||||||||| Sbjct 1007 TAGATATTAAAGCAGTTTGTCTAAGAGTATCGTAGATACCTT 966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424829558591328