Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq13015 147 3e-30 >seq13015 Length=2880 Score = 147 bits (162), Expect = 3e-30 Identities = 841/1329 (63%), Gaps = 24/1329 (2%) Strand=Plus/Minus Query 110678 ACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCAT 110737 ||||||||||| || | ||||| ||||| || || ||||| ||||||||| || Sbjct 2190 ACAAACTCACCAGCCAATACCCTTCTTGTGTAGACATTGGTGGTGTAGGGTTCAAAGGAT 2131 Query 110738 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 110797 ||||| || || || ||||||| || || || |||||||| || || | | ||| | Sbjct 2130 TCATTGTTCCCTAATATTTGTGAAGTTGATGCAGTTGGCATAGGAGCAACTAGGAGAGAG 2071 Query 110798 TTACGAAGACCCTTCTCCTTGA-TGCGTTCCTTGAGAACATCCCAGTCGTAG-TTG-AGC 110854 ||||| ||| | | | | | | | | ||| || | ||| || || ||| || Sbjct 2070 TTACGGGCACCGTGTTACATAACTTCCTATCTT-AGTGTTTACCAATCATACCTTGTAGT 2012 Query 110855 TTG-GTTTCACCTTCCCACATGTCAAACT-GAAGCACCCCTTGGGAC-GCG-GGAGAACC 110910 | | ||| | | ||| | ||||| | ||| || || || | | |||||||| Sbjct 2011 ATAAGGTTCTTCATTCCATAGATCAAATTAGAATTTTCCTTT---ACTGAGTGGAGAACC 1955 Query 110911 CTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGG---GA 110967 | || |||||||| | || | ||| ||| | || | | | || || || Sbjct 1954 TTAGAATGTTTCATAAGGGCCCTCTTCTTTAGCTAGTTGAA---TTGATTCAAGCATCGA 1898 Query 110968 TGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA 111027 || ||||| ||||| ||||| || |||| || ||||||||||| ||||| Sbjct 1897 AGCATGATAAATGGTCTCAAATATCTTCTTGTTCAAATCAGCAGCTTCATCTGATTCAAA 1838 Query 111028 TGCGTAGCGGCACAAAATAAATAC-ATCCGCGAGACCTTGAACACCCAAACCAATAGGTC 111086 ||| | || || || | | ||| || || || | |||||| | ||||||||||| Sbjct 1837 TGCAAATTT-CAGTAATTAGAAAGTATCAGCTAGTCCCTAAACACCTATACCAATAGGTC 1779 Query 111087 TGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTC 111146 |||| || | |||||| ||| || || || || || || || ||||||| Sbjct 1778 TGTGACGGAGATTAGATTTTTCGGCTTCTTCTACTGGGTAGAAGTTGACATCAATGATCT 1719 Query 111147 GGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGC 111206 ||||| ||| || | | || | |||||| ||| ||||||||||||| || Sbjct 1718 TGTTTAAATTGCGAGTTATTACACGAGTCACTTCATGGAGTCTTTCATAATCAAAGGTCT 1659 Query 111207 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 111266 | |||| || ||||| | ||||| | ||||| || | ||| |||||||| | | Sbjct 1658 ACGATTCTTTGTTCACATATCTAGGAAGAGATATTGAGGCGAGATTACAAACAGCAATTT 1599 Query 111267 CATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCA 111326 |||| |||||| || | ||||| || | |||||| || || || || | Sbjct 1598 CATCTGGGGATGTGTATTCGACTATTTCACAGCAAAGGTTGGATGATTTTATTGTACCTA 1539 Query 111327 AATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 111386 ||| || || ||| || || ||||||||||| || ||||||||||| || || || | Sbjct 1538 AATGCTATTAGTTTGATTTTTTATTGCACGCATCTTTATAGAGCATGTATGGAGTGCCAG 1479 Query 111387 TCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGG 111446 | || || |||| | |||||| | ||||| | |||| | || ||| Sbjct 1478 TTTCTTGTTGAGATTCAATAATAGCTTCCCAAAGTTTTTAGGCTTTGATAACTTTTTTGC 1419 Query 111447 CCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGG 111506 || || || ||| |||||| || || |||||| ||||| || | | || Sbjct 1418 CCTTGCCTTCTTTCTCATACTTTTCATAAAGCTTTTCAAATTCCTCTCCAAAAACATCTT 1359 Query 111507 AGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCT 111566 | || ||||||| | ||||||||||| | ||| | ||| || || | | Sbjct 1358 GTAAGCCGGGTGCCTCATTAGGACAGAAAAGTGTCCAATCTCCATTAGACTTCACTCTAT 1299 Query 111567 TCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGT 111626 |||| || || ||||| | ||| | | |||||||||||||| | || || | Sbjct 1298 TCATAAATAGATCTGGCACCCATAAAGCATAAAAGAGATCTCTAGCTCTTTATTCCTCTT 1239 Query 111627 CACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGA 111685 ||| ||||| || | | | ||| || || | | ||| || ||||| || || ||| Sbjct 1238 TACCGTGGTT-CTTCTTCATCATAAGAAAATCGAAAACATCAGCATGCCAAGGTTCTAGA 1180 Query 111686 TAGACTGCGATAGATCC---CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCG 111742 || | || | || || | || || ||| |||| | ||||| | || || | Sbjct 1179 TAAATGGCAAAGGAACCTTTCCTTTTACCACCACCTTGGTCAACATATCTAGCAGTTTCA 1120 Query 111743 TTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGA 111802 || || || | ||||||||| | |||| || | ||||| || || |||| | Sbjct 1119 TTGAAAACCTTTAACATTGGAATTAAGCCATTAGAGTAGCCATTAGTGCCTTTAATATAA 1060 Query 111803 GATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATT 111862 || ||||| | | ||| || | ||||| || ||||| |||| || ||| Sbjct 1059 GAGCCTGAAGCTCTTATACAATGAATTGAAAGTCCAATTCCACCAGCTGACTTAGATATT 1000 Query 111863 TGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATA 111922 ||| | ||||||| | |||||||| | ||||| || || || | | | | Sbjct 999 AAAGCAGTTTGTCTAAGAGTATCGTAGATACCTTGTATTGAATCGTCTTTCATAGTCAAA 940 Query 111923 AGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCG 111982 ||||| || ||||| | || | |||||||||| ||||| | || || || || Sbjct 939 AGGAAACATGAAGACATTTATGGCTTGGGTGTACCAGAGTTGAATAAAGTAGGAGTGGCA 880 Query 111983 TGAATGAAC 111991 ||| | ||| Sbjct 879 TGAGTAAAC 871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627873076502400