Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3089 127 2e-24 seq3091 125 8e-24 seq3090 125 8e-24 seq5846 107 2e-18 seq11541 102 9e-17 >seq3089 Length=958 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||| ||||||| |||||||| | || |||||||| || || ||||| |||||| || Sbjct 609 AATGTAAATCTTCGTCAAGACTTTGACTGGCAAGACCATCACCCTTGATGTTGAGCCATC 668 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| || ||||| || |||||||| || || || || || Sbjct 669 TGACACCATTGAGAATGTCAAGGCCAAGATTCAAGATAAGGAGGGTATCCCACCCGATCA 728 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 | | | || || |||||||| ||||| || |||| | || || | |||||||| Sbjct 729 ATAAAGATTGATCTTCGCTGGTAAACAACTTGAAGATGGAAGAACATTATCTGACTATAA 788 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 | ||||||||||| || | ||| |||| || Sbjct 789 CATTCAAAAGGAATCAACCTTGCATTTAGTATT 821 Score = 125 bits (138), Expect = 8e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || | || || ||||| || |||||||| ||||| | Sbjct 382 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCA 441 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||| || ||||| || || || Sbjct 442 GACACCATCGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 501 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || ||||| ||||| || |||||||| |||| | || ||| ||||| ||| Sbjct 502 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAAT 561 Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609 |||||||||| || ||||| ||| Sbjct 562 ATCCAAAAGGAGTCTACTCTCCAT 585 >seq3091 Length=1223 Score = 125 bits (138), Expect = 8e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || | || || ||||| || |||||||| ||||| | Sbjct 610 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCA 669 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||| || ||||| || || || Sbjct 670 GACACCATCGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 729 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || ||||| ||||| || |||||||| |||| | || ||| ||||| ||| Sbjct 730 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAAT 789 Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609 |||||||||| || ||||| ||| Sbjct 790 ATCCAAAAGGAGTCTACTCTCCAT 813 >seq3090 Length=995 Score = 125 bits (138), Expect = 8e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || | || || ||||| || |||||||| ||||| | Sbjct 382 ATGCAAATCTTCGTCAAAACTTTGACTGGAAAGACCATCACTCTTGATGTTGAACCCTCA 441 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||| || ||||| || || || Sbjct 442 GACACCATCGAAAACGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 501 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || ||||| ||||| || |||||||| |||| | || ||| ||||| ||| Sbjct 502 CAAAGACTCATTTTCGCTGGAAAACAACTCGAAGATGGAAGAACTCTAAGTGACTACAAT 561 Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609 |||||||||| || ||||| ||| Sbjct 562 ATCCAAAAGGAGTCTACTCTCCAT 585 >seq5846 Length=3076 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || | || || || || |||||| |||| | || || | Sbjct 791 AATGCAAATCTTTGTTAAAACTTTAACAGGAAAAACAATTACTATTGATGCAGAACCAAG 850 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| | |||||||| || |||| |||||||| || ||||| | Sbjct 851 TGATACTATTGAAAATATAAAGGCTAAGATATAGGATAAGGAGGGTATAGACCCAGAGGA 910 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATC-GTACCCTAGCAGACTATA 27583 || | ||||| |||||||| ||| || | || |||| || ||| ||| || |||| Sbjct 911 ATAGAGGCTAATATTTGCTGGAAAGTAATTAGAAGATGGTCTGTA-ACTAATCGATTATA 969 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 || | | || ||||| || || ||| |||| Sbjct 970 ATATATAGAAAGAATCTACACTGCATTTAGT 1000 >seq11541 Length=746 Score = 102 bits (112), Expect = 9e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||| |||| || || || || || || ||||| ||||| || | || |||||| | Sbjct 154 AATGTAAATTTTCGTTAAAACACTCACTGGCAAAACTATCACCTTAGATGTTGAGCCCTC 213 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| ||| | || ||||| ||| ||||||||||||| || || || || || Sbjct 214 AGATACAATTGAAAACGTCAAAGCTAAGATTTAGGACAAGGAGGGCATCCCACCCGATCA 273 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | || || || ||||| || || || || |||| | || || ||||||| || Sbjct 274 ATAGAGACTCATATTCGCTGGAAAACAGCTAGAAGATGGAAGAACATTATCAGACTACAA 333 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || |||| ||||| || | || |||||||| Sbjct 334 CATCTAAAAAGAATCTACATTACACTTAGTCTTG 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570166082953280