Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3091 105 4e-18 seq3090 105 4e-18 seq3089 105 4e-18 >seq3091 Length=1223 Score = 105 bits (116), Expect = 4e-18 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | ||| || | ||||||||| |||||| | ||||| ||||| || Sbjct 380 CCTCCTCTAAGTCTCAAAACTAGATGGAGAGTAGACTCCTTCTAGATGTTGTAATCGGAG 321 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| | ||| || || || || || | | ||||| || || || Sbjct 320 AGGGTTCTGCCATCTTCCAATTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGAGGG 261 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCT--TCGCTCTCC 34656 | || ||||||||| |||||| | || ||| | ||| |||||| | ||||| Sbjct 260 ATACCTTCCTTGTCTTGGATCTTA-GCCTTGACGTTCTCAATGGTGTCTGATGGCTCT-- 204 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || |||| || || || ||||||||||| || || || ||||||| |||||| Sbjct 203 ACGTCCAATGTAATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACATGTT 151 >seq3090 Length=995 Score = 105 bits (116), Expect = 4e-18 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | |||||| || ||||| || |||||| | ||||| || || Sbjct 380 CCACCTCTGAGTCTCAACACTAAGTGGAGGGTTGACTCCTTCTAGATGTTGTAGTCGCTC 321 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | |||||||||||||| |||||||| || | | ||||| || || || Sbjct 320 AAGGTTCTGCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGG 261 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT--TCGCTCTCC 34656 | || ||||||||| |||| || | || ||| | ||| |||||| | ||||| Sbjct 260 ATGCCTTCCTTGTCTTGGATC-TTAGCCTTGACGTTCTCAATGGTGTCTGATGGCTCT-- 204 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || |||| || || || ||||||||||| || || || ||||||| |||||| Sbjct 203 ACGTCCAATGTAATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACATGTT 151 >seq3089 Length=958 Score = 105 bits (116), Expect = 4e-18 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | |||||| || ||||| || |||||| | ||||| || || Sbjct 380 CCACCTCTGAGTCTCAACACTAAGTGGAGGGTTGACTCCTTCTAGATGTTGTAGTCGCTC 321 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | |||||||||||||| |||||||| || | | ||||| || || || Sbjct 320 AAGGTTCTGCCATCTTCAAGTTGTTTTCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGG 261 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT--TCGCTCTCC 34656 | || ||||||||| |||| || | || ||| | ||| |||||| | ||||| Sbjct 260 ATGCCTTCCTTGTCTTGGATC-TTAGCCTTGACGTTCTCAATGGTGTCTGATGGCTCT-- 204 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || |||| || || || ||||||||||| || || || ||||||| |||||| Sbjct 203 ACGTCCAATGTAATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACATGTT 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314651948732852