Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3088 132 3e-26 seq11541 127 1e-24 seq14708 122 6e-23 seq3091 100 2e-16 >seq3088 Length=519 Score = 132 bits (146), Expect = 3e-26 Identities = 174/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||| | |||||||||||||| ||||| || ||||| ||||| | || ||||| || Sbjct 153 AAAATGTAAATTTTCGTTAAAACACTCACTGGCAAAACTATCACCTTAGATGTTGAGCCC 212 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||||| | ||| || ||| |||||||| || | || || ||| Sbjct 213 TCAGATACAATTGAAAACGTGAAAGCTAAGATTTAGGACAAAGAGGGCATCCCACCCGAT 272 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||| | | || || ||||| || ||| | || ||||| | | | |||||| || || Sbjct 273 CAATAAAGATTGATCTTTGCAGGAAAATAGCTTGAAGATGGAAGAACTTTATCTGACTAT 332 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAGCAGTT 23847 ||||| || || || || || || |||||||| ||||| ||| ||||||| | |||| || Sbjct 333 AACATTCAGAAGGAATCAACCTTGCATTTAGTATTAAGATTGAGAGGAGGTTGAGCAATT 392 Query 23848 A 23848 | Sbjct 393 A 393 >seq11541 Length=746 Score = 127 bits (140), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||| | |||||||||||||| ||||| || ||||| ||||| | || ||||| || Sbjct 152 AAAATGTAAATTTTCGTTAAAACACTCACTGGCAAAACTATCACCTTAGATGTTGAGCCC 211 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||||| | ||| || ||| ||||| || || | || || ||| Sbjct 212 TCAGATACAATTGAAAACGTCAAAGCTAAGATTTAGGACAAGGAGGGCATCCCACCCGAT 271 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||| || | | ||||| || || ||||| || ||||| | | | || ||| || ||| Sbjct 272 CAATAGAGACTCATATTCGCTGGAAAACAGCTAGAAGATGGAAGAACATTATCAGACTAC 331 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| ||||||| || |||||||| ||||| || || || ||||||| Sbjct 332 AACATCTAAAAAGAATCTACATTACACTTAGTCTTGAGATTAAGAGGAGG 381 Score = 127 bits (140), Expect = 1e-24 Identities = 173/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||| |||| ||||||||||| | || ||||| || || ||| | || ||||| | | Sbjct 383 ATGTAGATCTTCGTTAAAACATTAACTGGAAAGACCATTACTTTAGATGTTGAGCCATCT 442 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| ||| |||| ||||| | |||||| || || |||||| | || || ||||| Sbjct 443 GACACAATTGAAAATGTTAAAGC-AAAAATCTAAGATAAGGAAGGTATTCCACCCGATCA 501 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 | | | || || ||||| || ||| | || ||||| | | | |||||| || || || Sbjct 502 ATAAAGATTGATCTTTGCAGGAAAATAGCTTGAAGATGGAAGAACTTTATCTGACTATAA 561 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAGCAGTTA 23848 ||| || || || || || || |||||||| ||||| ||| ||||||| | |||| ||| Sbjct 562 CATTCAGAAGGAATCAACCTTGCATTTAGTATTAAGATTGAGAGGAGGTTGAGCAATTA 620 >seq14708 Length=579 Score = 122 bits (134), Expect = 6e-23 Identities = 175/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||| |||| ||||||||||| | || ||||| || || ||| | || ||||| | | Sbjct 233 ATGTAGATCTTCGTTAAAACATTAACTGGAAAGACCATTACTTTAGATGTTGAGCCATCT 292 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| ||| |||| ||||| | |||||| || || |||||| | || || ||||| Sbjct 293 GACACAATTGAAAATGTTAAAGC-AAAAATCTAAGATAAGGAAGGTATTCCACCCGATCA 351 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 | | | || || ||||| || ||| | || ||||| | | | |||||| || || || Sbjct 352 ATAAAGATTGATCTTTGCAGGAAAATAGCTTGAAGATGGAAGAACTTTATCTGACTATAA 411 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAGCAGTTAA 23849 ||| || || || || || || |||||||| ||||| ||| ||||||| | || | ||| Sbjct 412 CATTCAGAAGGAATCAACCTTGCATTTAGTATTAAGATTGAGAGGAGGTTGAGTAACTAA 471 Query 23850 AGAT 23853 | || Sbjct 472 ATAT 475 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||| |||| ||||||||||| || || ||||| || || || | || || || | | Sbjct 5 ATGTAGATCTTCGTTAAAACTCTTACTGGAAAGACCATTACCTTGGACGTAGAGCCATCA 64 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| | ||| || |||||||||||| | || || ||||| Sbjct 65 GATACCATTGAGAATGTGAAAGC-AAAGATCTAGGACAAAGAAGGTATTCCACCTGATCA 123 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 | || | | ||||| || || ||||| | ||||| | | | || ||| || ||||| Sbjct 124 ATAGAGACTCATATTCGCTGGTAAACAGTTAGAAGATGGAAGAACATTATCAGACTACAA 183 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||||| || |||||||| ||||| || || || ||||||| Sbjct 184 CATCTAAAAAGAATCTACATTACACTTAGTCTTGAGATTAAGAGGAGG 231 >seq3091 Length=1223 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||| | || |||||||| |||||||| || || || ||||||||||| ||||| | | Sbjct 382 ATGTAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGACGTTGAACCATCA 441 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || || || || ||||| | || || |||||| Sbjct 442 GACACTATTGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATCCCACCCGATCAA 501 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || |||||||| |||||||| ||||| | | || || |||| |||||| Sbjct 502 CAAAGACTCATCTTTGCCGGAAAACAACTTGAAGATGGCAGAACCTTGAGCGACTACAAC 561 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || | || ||||| || | || ||||| || || Sbjct 562 ATCTAGAAGGAGTCAACCCTCCACTTAGTGTTGAG 596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337926205003952