Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq13015 295 9e-75 seq12968 262 5e-65 >seq13015 Length=2880 Score = 295 bits (326), Expect = 9e-75 Identities = 984/1510 (65%), Gaps = 27/1510 (2%) Strand=Plus/Minus Query 77101 CTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAA 77160 |||| | ||||| || ||||| | ||| || |||| |||||| || | ||||| | Sbjct 2216 CTCTCACTAGATGTGGGTTAACGCATACAAACTCACCAGCCAATACCCTTCTTGTGTAGA 2157 Query 77161 TATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAG 77220 ||| |||| || ||||| | ||||||||||| || || ||||| | ||| || |||| Sbjct 2156 CATTGGTGGTGTAGGGTTCAAAGGATTCATTGTTCCCTAATATTTGTGAAGTTGATGCAG 2097 Query 77221 TTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTA 77280 |||||||||| || || | | | || | | ||| ||| | | || | | ||| Sbjct 2096 TTGGCATAGGAGCAACTAGGAGAGAGTTACGGGCACCGTGTTACATAACTTCCTATCTTA 2037 Query 77281 GATATTTCCAATC---CCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAA 77337 | || |||||| || | ||||| | ||| ||| ||||| ||| |||| Sbjct 2036 GTGTTTACCAATCATACCTTGTAGTATAAGGTTCTTCATTCCATAGATCAAATT--AGAA 1979 Query 77338 TT--CCGTTACT-AGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTA 77394 || || ||||| || | || || | ||||||||||||| || ||| || ||||| Sbjct 1978 TTTTCCTTTACTGAGTGGA-GAACCTTAGAATGTTTCATAAGGGCCCTCTTCTTTAGCTA 1920 Query 77395 GTTCACAACTCGCTTCCA--AT-GCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGA 77451 ||| | | | ||| | || | | | |||||| || || || |||||||| || | Sbjct 1919 GTTGAA---TTGATTCAAGCATCGAAGCATGATAAATGGTCTCAAATATCTTCTTGTTCA 1863 Query 77452 GATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATA-AAGGCATCTGCTAAT 77510 ||| |||||| ||||| | | ||| | | | || || | ||| |||| | Sbjct 1862 AATCAGCAGCTTCATCTGATTCAAATGCA-AATTTCAGTAATTAGAAAGTATCAGCTAGT 1804 Query 77511 CCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATA 77570 |||| ||| || |||||||||||||| || | ||| || ||| |||||| | Sbjct 1803 CCCTAAACACCTATACCAATAGGTCTGTGACGGAGATTAGATTTTTCGGCTTCTTCTACT 1744 Query 77571 GGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCC 77630 || || | || | || || || || || | ||| | | | ||| | ||| || Sbjct 1743 GGGTAGAAGTTGACATCAATGATCTTGTTTAAATTGCGAGTTATTACACGAGTCACTTCA 1684 Query 77631 TTTAGTTTAAGAAAATCAAA--TCTTCCAT-CTATAA-CAAACATGTTCAAAGCTATA-- 77684 | ||| | | ||||||| ||| | || || | || | || | ||| ||| Sbjct 1683 TGGAGTCTTTCATAATCAAAGGTCTACGATTCTTTGTTCACATATCTAGGAAGAGATATT 1624 Query 77685 GATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACAT 77744 || || ||||||||||| || | |||| | | | |||| | ||| || || Sbjct 1623 GAGGCGAGATTACAAACAGCAATTTCATCTGGGGATGTGTATTCGACTATTTCACAGCAA 1564 Query 77745 AGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCC 77804 || || |||| || || || | || | || ||| ||||||||||| | || Sbjct 1563 AGGTTGGATGATTTTATTGTACCTAAATGCTATTAGTTTGATTTTTTATTGCACGCATCT 1504 Query 77805 TTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACG 77864 ||||| || || | ||||| || ||||| || ||||| ||||||| || ||| | | Sbjct 1503 TTATAGAGCATGTATGGAGTGCCAGTTTCTTGTTGAGATTCAATAATAGCTTCCCAAA-G 1445 Query 77865 ACTCTAG-CTTTTATCATAGATTTGTA-TCGCCTCTCTCTTTCATATTGAGTATATAGCC 77922 | ||| |||| || | |||| | |||| ||| | ||||| | ||| ||| Sbjct 1444 TTTTTAGGCTTTGATAACTTTTTTGCCCTTGCCT-TCTTTCTCATACTTTTCATAAAGCT 1386 Query 77923 GTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATG 77982 ||||||||| ||||| ||||||| | || || || ||||| || || | | || Sbjct 1385 TTTCAAATTCCTCTCCAAAAACATCTTGTAAGCCGGGTGCCTCATTAGGACAGAAAAGTG 1326 Query 77983 ACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 78042 ||| || |||| ||| |||| |||||||| ||||| || | ||||| |||| || Sbjct 1325 TCCAATCTCCATTAGACTTCACTCTATTCATAAATAGATCTGGCACCCATAAAGCATAAA 1266 Query 78043 ATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCA 78102 | ||||||| | ||| | ||| || || || ||||| || | ||||| || | Sbjct 1265 AGAGATCTCTAGCTCTTTATTCCTCTTTACCGTGGTTCTTCTTCATCATAAGAAAATCGA 1206 Query 78103 TAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTC 78162 || ||||| |||||| ||||||||||| || || | || | |||| ||| | Sbjct 1205 AAACATCAGCATGCCAAGGTTCTAGATAAATGGCAAAGGAACCTTTCCTTTTACCACCAC 1146 Query 78163 CCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAG 78222 | || || | |||||| || || | ||| |||| | ||||||||||| | || |||| Sbjct 1145 CTTGGTCAACATATCTAGCAGTTTCATTGAAAACCTTTAACATTGGAATTAAGCCATTAG 1086 Query 78223 ATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCC 78282 | ||||| || || ||||||| || || | ||| | ||| || | | Sbjct 1085 AGTAGCCATTAGTGCCTTTAATATAAGAGCCTGAAGCTCTTATACAATGAATTGAAAGTC 1026 Query 78283 CTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCT 78342 | ||||| || || ||||||||||| ||| || | | |||||||||||||| | Sbjct 1025 CAATTCCACCAGCTGACTTAGATATTAAAGCAGTTTGTCTAAGAGTATCGTAGATACCTT 966 Query 78343 CTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTC 78402 ||| || || |||| | | ||| ||||| |||||||| | | || | Sbjct 965 GTATTGAATCGTCTTTCATAGTCAAAAGGAAACATGAAGACATTTATGGCTTGGGTGTAC 906 Query 78403 CTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATG 78462 | | || ||||| || |||| ||||| ||||||||||| || || | || || || | Sbjct 905 CAGAGTTGAATAAAGTAGGAGTGGCATGAGTAAACCATTTATCTGACATTAAATGATAAG 846 Query 78463 TTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATAT 78522 ||||||||||| | || || || || ||||||| | ||| | ||||||||| | Sbjct 845 TTTCAATAGCTCTCTTTACATCATTTTTGTGGATTCCTATGGATACTCTCATCAACATTT 786 Query 78523 GCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTT 78582 ||||||| |||||| | || || | ||| | || || || || || || |||| Sbjct 785 ATTGAGGTCGTTCAACGATTTTTCCATGAACTTTGAGTAAATAGGACTTCTCTAAGGTTT 726 Query 78583 TAAAACCAAA 78592 |||| ||||| Sbjct 725 TAAAGCCAAA 716 >seq12968 Length=2778 Score = 262 bits (290), Expect = 5e-65 Identities = 599/892 (67%), Gaps = 12/892 (1%) Strand=Plus/Plus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 |||| |||||| || || | ||||| || || || || |||||| | ||| || || Sbjct 157 TTTTAATATTCCCCGACTCTCTTCTCAAAGAAGTTTGTCTTGCCTGGTAGTGAAATCATT 216 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| | ||||||||||| | |||| || || | |||||| | | | Sbjct 217 TCCATCCACTCAAATGGATTTAACACATTGTAGTACTTAGGTACTCCTAAAGCAAAGAGT 276 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 |||||||| || || |||| ||||||| ||| | | | ||||||| || |||||| Sbjct 277 AGTCTATCAGCCACAAATTATATATATTGAGCCATTAAGTTAGAATTCATACCAATAAGT 336 Query 48030 TTAACTGGTAGAGCCTCCGTA-AGAAACTCTTGTTCGATAGTGACAGCATCC--ACTATT 48086 | |||||| ||||| | | | | ||||||| ||| || ||||||| | || | Sbjct 337 TCAACTGGGAGAGC-TGAGCATACAAACTCTAATTCAATTTATACAGCATTTGAAATAAT 395 Query 48087 ATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCA 48146 || | | | |||| | | | || || |||||| | | |||||||||| Sbjct 396 CTCCAAAATTC--TTTCATTAGATATCTTATTATTTAAGTGTTTATAGAGTAAACATGCA 453 Query 48147 AAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGC 48206 |||||| || | ||||||||||| || || | ||| ||| ||||| ||||| ||| Sbjct 454 AAATCAGTGTGCATGCCTTCATCTCTGCTTATGAGTTCATTACTGAATGTCAGACCAGGC 513 Query 48207 ATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCT 48266 |||| ||| || || || | ||| || || || ||| || || || || || || ||| Sbjct 514 ATTAATCCGCGCTTCTTCATCCAGAAGATAGCACAGAATGAGCCTGAGAAAAAGATACCT 573 Query 48267 TCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTG--TATCCACC 48324 || | || || ||||| | ||| || | || | || || | |||||| Sbjct 574 TCAATAGCAGCGAATGCTACTAATCTTTCGGCATAG--GAATTATCTGAGCCTATCCATT 631 Query 48325 GTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT-ATAGCATTAAAGAGA 48383 | ||||| || ||||| || ||| || || |||| | || || ||||| || Sbjct 632 TTAAGGCCCATTCGGCCTTTTTAGCAACAACCGGAAT-GTTTGTGATTGCTTTAAAAAGG 690 Query 48384 AAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAG 48443 |||| ||| || | ||| | | ||| ||||| || | |||| || | || ||| Sbjct 691 AAGTCTTTATCTTATGGATCAGTGATGTAGGTATCAATGAGAAGAGAGTAGGTCTCTGAG 750 Query 48444 TGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACC 48503 ||||| || || || ||| | |||||||||||| ||||| || || | || | | Sbjct 751 TGAATGTTCTCCATCATCATTTAAAATCCGTAAAAGCATCTAGCCTCAGGAATTTAGATT 810 Query 48504 TCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAAT 48563 || || || || | || ||||||||||||| |||||||||||||||||||| ||||| Sbjct 811 TCAGTGCAGAACCTTTAAGCCAAATTCTCAAGAACTATTCCATCACTAGCAGCGAAAAAG 870 Query 48564 GCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATA 48623 || | ||||| |||||||| | |||||| | ||||| | |||||| || | | Sbjct 871 GCAAGAACATGCTTAATAAAGTGTTTTTCACCATCGTTGAGTTTTTCCCAGTCTTTAACA 930 Query 48624 TCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATA 48683 || | | || |||| ||| ||||| ||||| || | ||| | | ||| ||||| Sbjct 931 TCAGTAGCTAAGTCTATTTCCTCAGCAGTCCAGAAGCAAGCCATTTAATCTTTGTACATC 990 Query 48684 TTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 |||||||||||| ||||| ||| || || || ||||| | || ||||||| Sbjct 991 TTCCATATATCATTGTATCTGATGGGTAATATTACAAAGCGGTTAGGATTTT 1042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694493014060160