Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3091 132 1e-25 seq3090 132 1e-25 seq3089 111 4e-19 seq11541 109 1e-18 >seq3091 Length=1223 Score = 132 bits (146), Expect = 1e-25 Identities = 165/224 (74%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||||||| || | ||| ||||| ||||| ||||||||||| || |||| || |||| Sbjct 1058 CTTAGTCTGAGCACCAAATGGAGAGTTGACTCCTTTTGGATGTTATAGTCGGATAGAGTT 999 Query 151944 CTCCCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || |||||||| | ||||| || |||||||| | || | || || | | ||| | Sbjct 998 CTTCCATCTTCCAATTGCTTT--CCTGCGAAGATCAATCTTTATTGATCGGGTGGGATAC 941 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 | ||||| |||||||| || |||||| |||| | | |||| || ||| || |||| Sbjct 940 CCTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAACATCAA 881 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || ||||| || | |||||| ||||||| | |||| Sbjct 880 GGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACATT 837 Score = 120 bits (132), Expect = 7e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | || ||||| ||||||||||| || | |||||||||||||| | ||| Sbjct 374 CTAAGTCTCAAAACTAGATGGAGAGTAGACTCCTTCTAGATGTTGTAATCGGAGAGGGTT 315 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| | || || |||||||| || || || || || | | ||| ||| Sbjct 314 CTGCCATCTTCCAATTGCTTGCCAGCGAAGATGAGTCTTTGTTGATCGGGAGGGATACCT 255 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || ||||| |||| | | ||||||| |||||| || | Sbjct 254 TCCTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGTCTGATGGCTCTACGTCCAAT 195 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || || || | ||||| ||||| | || ||| || Sbjct 194 GTAATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACATGTT 151 Score = 111 bits (122), Expect = 4e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 |||||| || | ||| ||||||||||| |||||||| ||||| || || |||||| || Sbjct 825 TCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTTCC 766 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| || ||| || ||||| || || || || || || | | || |||||||| Sbjct 765 ATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTT 706 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 || | || || ||||| | || | | ||||||| || || |||||||| || Sbjct 705 GTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTGAT 646 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || | ||| || ||||||| ||||| Sbjct 645 GGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 610 >seq3090 Length=995 Score = 132 bits (146), Expect = 1e-25 Identities = 165/224 (74%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||||||| || | ||| ||||| ||||| ||||||||||| || |||| || |||| Sbjct 830 CTTAGTCTGAGCACCAAATGGAGAGTTGACTCCTTTTGGATGTTATAGTCGGATAGAGTT 771 Query 151944 CTCCCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || |||||||| | ||||| || |||||||| | || | || || | | ||| | Sbjct 770 CTTCCATCTTCCAATTGCTTT--CCTGCGAAGATCAATCTTTATTGATCGGGTGGGATAC 713 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 | ||||| |||||||| || |||||| |||| | | |||| || ||| || |||| Sbjct 712 CCTCCTTATCTTGAATCTTGGCCTTGACATTCTCAATGGTGTCAGATGGCTCAACATCAA 653 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || ||||| || | |||||| ||||||| | |||| Sbjct 652 GGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATTTACATT 609 Score = 111 bits (122), Expect = 4e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 |||||| || | ||| ||||||||||| |||||||| ||||| || || |||||| || Sbjct 597 TCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTTCC 538 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| || ||| || ||||| || || || || || || | | || |||||||| Sbjct 537 ATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTT 478 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 || | || || ||||| | || | | ||||||| || || |||||||| || Sbjct 477 GTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTGAT 418 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || | ||| || ||||||| ||||| Sbjct 417 GGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 >seq3089 Length=958 Score = 111 bits (122), Expect = 4e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 |||||| || | ||| ||||||||||| |||||||| ||||| || || |||||| || Sbjct 597 TCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCACTTAGAGTTCTTCC 538 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| || ||| || ||||| || || || || || || | | || |||||||| Sbjct 537 ATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGATCGGGGGGAATACCTTCCTT 478 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 || | || || ||||| | || | | ||||||| || || |||||||| || Sbjct 477 GTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAGGGTTCAACATCAAGAGTGAT 418 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || | ||| || ||||||| ||||| Sbjct 417 GGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 >seq11541 Length=746 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| ||||||| ||||||||| || | ||| ||||| ||||||||||| ||| || Sbjct 351 GTAGATTCTTTTTAGATGTTGTAGTCTGATAATGTTCTTCCATCTTCTAGCTGTTTTCCA 292 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || || |||| || || | | ||| || ||||| || | ||| || |||| Sbjct 291 GCGAATATGAGTCTCTATTGATCGGGTGGGATGCCCTCCTTGTCCTAAATCTTAGCTTTG 232 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | | ||||| ||| || || | || ||||||||||| ||||| || Sbjct 231 ACGTTTTCAATTGTATCTGAGGGCTCAACATCTAAGGTGATAGTTTTGCCAGTGAGTGTT 172 Query 152088 TTCACGAAGACCTGCATTTT 152107 || ||||| | | |||||| Sbjct 171 TTAACGAAAATTTACATTTT 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153521526287724