Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urostyla_20sp._20PUJRC_5FG1_20[genbank_20GCA_5F001272955.2_202015- 12-23] 20,244 sequences; 42,622,442 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3091 105 5e-18 seq3090 93.3 3e-14 seq3089 93.3 3e-14 >seq3091 Length=1223 Score = 105 bits (116), Expect = 5e-18 Identities = 169/238 (71%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| |||||||| || || || || || |||||| | ||||||||| Sbjct 387 TTACATACCTCCTCTAAGTCTCAAAACTAGATGGAGAGTAGACTCCTTCTAGATGTTGTA 328 Query 44164 ATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 ||||| ||| || || | || |||| ||||| || || ||||| | | || ||| Sbjct 327 ATCGGAGAG--GGTTCTGCCATCTTCCAATTGCTTGCCAGCGAAGATGAGTCTTTGTTGA 270 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGC 44280 || | ||| | ||||||||| || ||||| || | | |||| | |||||||| | Sbjct 269 TCGGGAGGGATACCTTCCTTGTCTTGGATCTT-AGCCTTGACGTTCTCAATGGTGTCTGA 211 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || |||| ||||| ||||| || || | |||||| ||||| || | |||| Sbjct 210 TGGCTCTACGTCCAATGTAATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACATG 153 Score = 105 bits (116), Expect = 5e-18 Identities = 168/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| ||||||||||| | ||| || || |||||| | ||||||||| Sbjct 615 TTGCATACCACCTCTGAGTCTCAACACTAAGTGGAGGGTTGACTCCTTCTAGATGTTGTA 556 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 ||| | || | || | || || || || || ||||||||||| | | || |||| Sbjct 555 GTCGCTCAAGGTTCTGC-CATCTTCAAGTTGTTTTCCGGCAAAGATGAGTCTTTGTTGAT 497 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281 | | || | |||||||| || ||||| ||||| |||| | || ||||| | Sbjct 496 CGGGTGGGATGCCTTCCTTATCTTGGATCTTGGCCTTCAC-GTTCTCAATAGTGTCTGAT 438 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || || | || || ||||| || ||||||||||| |||||||||| ||| Sbjct 437 GGTTCAACGTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTACAT 382 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||||| ||| | |||| || || || |||||||||||| ||||| Sbjct 843 TTACATTCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTA 784 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || ||||| | | || || || || || || || || || | | || ||| Sbjct 783 GTCACTTAGAGTT--CTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGA 726 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | ||||||||| ||| ||||| ||| | || | |||||||| | | Sbjct 725 TCGGGGGGAATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAG 666 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || || | || || |||||||| || | || || |||||||||||||| Sbjct 665 GGTTCAACATCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 610 >seq3090 Length=995 Score = 93.3 bits (102), Expect = 3e-14 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| ||||||||||| | ||| || || |||||| | ||||||||| Sbjct 387 TTGCATACCACCTCTGAGTCTCAACACTAAGTGGAGGGTTGACTCCTTCTAGATGTTGTA 328 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 ||| | || | || | || || || || || ||||||||||| | | || |||| Sbjct 327 GTCGCTCAAGGTTCTGC-CATCTTCAAGTTGTTTTCCGGCAAAGATGAGTCTTTGTTGAT 269 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281 | | || | |||||||| || ||||| || | | |||| | |||||||| | Sbjct 268 CGGGTGGGATGCCTTCCTTGTCTTGGATCTT-AGCCTTGACGTTCTCAATGGTGTCTGAT 210 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || |||| ||||| ||||| || || | |||||| ||||| || | |||| Sbjct 209 GGCTCTACGTCCAATGTAATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACATG 153 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||||| ||| | |||| || || || |||||||||||| ||||| Sbjct 615 TTACATTCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTA 556 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || ||||| | | || || || || || || || || || | | || ||| Sbjct 555 GTCACTTAGAGTT--CTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGA 498 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | ||||||||| ||| ||||| ||| | || | |||||||| | | Sbjct 497 TCGGGGGGAATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAG 438 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || || | || || |||||||| || | || || |||||||||||||| Sbjct 437 GGTTCAACATCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 >seq3089 Length=958 Score = 93.3 bits (102), Expect = 3e-14 Identities = 166/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| ||||||||||| | ||| || || |||||| | ||||||||| Sbjct 387 TTGCATACCACCTCTGAGTCTCAACACTAAGTGGAGGGTTGACTCCTTCTAGATGTTGTA 328 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 ||| | || | || | || || || || || ||||||||||| | | || |||| Sbjct 327 GTCGCTCAAGGTTCTGC-CATCTTCAAGTTGTTTTCCGGCAAAGATGAGTCTTTGTTGAT 269 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281 | | || | |||||||| || ||||| || | | |||| | |||||||| | Sbjct 268 CGGGTGGGATGCCTTCCTTGTCTTGGATCTT-AGCCTTGACGTTCTCAATGGTGTCTGAT 210 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || |||| ||||| ||||| || || | |||||| ||||| || | |||| Sbjct 209 GGCTCTACGTCCAATGTAATGGTCTTACCGGTTAAGGTCTTAACGAAAATCTACATG 153 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||||| ||| | |||| || || || |||||||||||| ||||| Sbjct 615 TTACATTCCACCTCTCAATCTGAGAACCAAATGGAGAGTAGACTCCTTTTGGATATTGTA 556 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || ||||| | | || || || || || || || || || | | || ||| Sbjct 555 GTCACTTAGAGTT--CTTCCATCTTCGAGTTGTTTTCCAGCGAAAATGAGTCTTTGTTGA 498 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | ||||||||| ||| ||||| ||| | || | |||||||| | | Sbjct 497 TCGGGGGGAATACCTTCCTTGTCCTAGATCTTGGCCTTGACGTTTTCGATGGTGTCTGAG 438 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || || | || || |||||||| || | || || |||||||||||||| Sbjct 437 GGTTCAACATCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTGACGAAGATTTGCAT 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359901581818548