Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq93742 87.8 2e-12 seq85083 87.8 2e-12 seq84820 87.8 2e-12 seq98102 84.2 2e-11 seq97888 84.2 2e-11 >seq93742 Length=2862 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 || ||||||||| ||| | || ||| |||| || || ||||||||| || ||| | Sbjct 994 AACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAATC 935 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || | | | | | |||||||| || || || ||||| | ||| || Sbjct 934 CTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCTGA 875 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| || | || |||||||| ||||| || || || ||| ||| ||||||| || Sbjct 874 TCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGACTA 815 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||| ||||| ||||| || ||| |||| | || || | ||||| Sbjct 814 CAATATTCAAAAGGAGTCTACCCTCCACTTGGTCCTTCGTTTGAGGGGAGG 764 >seq85083 Length=2832 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 || ||||||||| ||| | || ||| |||| || || ||||||||| || ||| | Sbjct 964 AACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAATC 905 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || | | | | | |||||||| || || || ||||| | ||| || Sbjct 904 CTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCTGA 845 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| || | || |||||||| ||||| || || || ||| ||| ||||||| || Sbjct 844 TCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGACTA 785 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||| ||||| ||||| || ||| |||| | || || | ||||| Sbjct 784 CAATATTCAAAAGGAGTCTACCCTCCACTTGGTCCTTCGTTTGAGGGGAGG 734 >seq84820 Length=3640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 || ||||||||| ||| | || ||| |||| || || ||||||||| || ||| | Sbjct 3074 AACAATGCAAATCTTCGTGAAGACACTGACTGGAAAGACCATTACCCTTGAGGTCGAATC 3133 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || | | | | | |||||||| || || || ||||| | ||| || Sbjct 3134 CTCTGACTCTATTGAGAACGTCAAGCAAAAGATACAGGACAAGGAAGGCATCCCCCCTGA 3193 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| || | || |||||||| ||||| || || || ||| ||| ||||||| || Sbjct 3194 TCAGCAGCGTCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGCACTTTGGCCGACTA 3253 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||| ||||| ||||| || ||| |||| | || || | ||||| Sbjct 3254 CAATATTCAAAAGGAGTCTACCCTCCACTTGGTCCTTCGTTTGAGGGGAGG 3304 >seq98102 Length=5793 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||| |||||| || || ||||| | || ||||||||| | || |||||||| Sbjct 4896 AAGCAGAAAATTCAGGACAAGGAAGGCATCCCACCAGATCAACAGCGCCTCATCTTTGCA 4955 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 ||||| || || || ||| || |||| || ||||| || |||||||| |||||| Sbjct 4956 GGCAAGCAGCTTGAGGATGGTCGTACCTTGGCTGACTACAACATCCAGAAGGAGTCTACT 5015 Query 29160 CTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| ||||| | |||| || ||||| Sbjct 5016 CTTCATCTGGTGCTCAGATTGCGTGGAGG 5044 >seq97888 Length=8055 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || | || || ||||| ||||| ||||| ||| || ||| || | Sbjct 1984 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAATCCTC 2043 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || | | | | | |||||||| || || ||||| || | ||| ||||| Sbjct 2044 TGATTCCATTGAGAACGTAAAGCAAAAGATCCAGGACAAAGAGGGCATCCCCCCTGATCA 2103 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || | || ||||| || ||||| || || || ||| | || ||||||||||||| Sbjct 2104 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCTTGGCCGATTACAA 2163 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||| ||||| |||||||||||| ||||| Sbjct 2164 CATTCAAAAGGAGTCTACTCTTCACTTGGTG 2194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427823111544440