Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq97584 123 5e-23 >seq97584 Length=40438 Score = 123 bits (136), Expect = 5e-23 Identities = 388/588 (66%), Gaps = 15/588 (3%) Strand=Plus/Minus Query 248827 TTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAA 248886 |||| ||||| || |||| || |||||| ||||| | | |||| || ||||| Sbjct 29963 TTTGGCTTCAAGACATTGGAACGCTCTTATCTCTTCAAATTGAACGGCACAATTGTGGAG 29904 Query 248887 CGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGC 248946 | || ||||||||||||||||| ||||| || | |||||| |||||| ||||| Sbjct 29903 AGGCCCCAACACATGTTGATGCGAGTTGCTGTAGGACTGCACAAGACTGACATC-AGAGC 29845 Query 248947 -GTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCT 249005 || | |||||||| | || | ||| | | || |||||||| || || || Sbjct 29844 TGTATTGGAGACGTATAATCTTATCTCTCAACAATTATTCACTCATGCCACTCCCACACT 29785 Query 249006 CTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAG 249064 ||||| || || || | | || | || || |||||||| || || |||||||| Sbjct 29784 TTTCAATGCTGGCACGCCACGACCA-CAACTTTCTTCGTGCTTCCTCGTTAACATGCAAG 29726 Query 249065 ACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCG 249124 | ||| | || || || || ||||||||||||||| || ||||||||| || Sbjct 29725 AAGACAGCATAGAAGGGATATACGACACGCTTAAACAGTGCGCCTTGATTTCTAAGAGCG 29666 Query 249125 CGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTA 249184 | || ||||| ||||| || ||| || || || |||||||||| || | Sbjct 29665 CCGGAGGAATTGGTCTTAGTGTGCACAAAATTCGTGCTGCCAACTCGTACATCAGGGGCA 29606 Query 249185 CAAATGG--GGTCAGTGATGGTATCGTACCCCTCCTTCGA---TGCTTTGAGTCCAC-CG 249238 | || || ||| | ||| || | || | || ||| | | ||| | | || Sbjct 29605 CCAACGGCACGTC--CAACGGTCTCATTCCAATGCTGCGAGTGTACAATGACACAGCACG 29548 Query 249239 CCAGGTTCATCAACCAGGCCGGGCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGT 249298 | | || ||||| || || | ||||| | ||||| || ||| |||| | Sbjct 29547 CTACGTAGATCAAGGTGG-TGGCAAGAGGAAGGGAGCATTCGCAATCTATCTGGAGCCTT 29489 Query 249299 GGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACG-AGCTCATG 249357 ||||||| || || || ||||| |||| ||||||||||| ||||||| | || || | Sbjct 29488 GGCACGCGGACATCTTTGAGTTTTTGGAGCTGAAAAAGAACCACGGCAAGGAAGAGCA-G 29430 Query 249358 AGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 |||| | || |||||| | | |||||||| |||| |||||||| Sbjct 29429 CGAGCCAGAGATCTCTTCCATGCTCTGTGGGTACCCGATCTGTTCATG 29382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072414740171264