Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq96149 95.1 1e-14 >seq96149 Length=6040 Score = 95.1 bits (104), Expect = 1e-14 Identities = 291/443 (66%), Gaps = 19/443 (4%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTT 14260 ||| ||||| || |||||||||||||||||||| || || | || || |||| | Sbjct 1473 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAG-- 1416 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 | || ||||| | || | || || | |||||| || | | ||| ||| || ||| Sbjct 1415 AGGCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAG 1356 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTC---CAAA----CGATGCTTT 14373 || || || || || || || || || | |||| |||| ||| | ||| Sbjct 1355 AAGATGCCTTCCACGGCGGCGAATGCAACCAATC--TCTCAGGGAAAGTGTCAGTGCCAC 1298 Query 14374 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14433 | | ||| |||||||| |||||| |||| ||| || || | | || || || || Sbjct 1297 TCTTTTC--AATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATC 1240 Query 14434 AATAGCATTAAATAAATGTTCCTTCTC--TTTAGTACTTGAAATGTATGTATCAATAAGT 14491 || ||||| || | ||| |||||||| | || ||| | ||| || || || | Sbjct 1239 GATGGCATTGAAGAGATGATCCTTCTCGACGTGGTCCTT--CACGTAGGTGTCGATCAAG 1182 Query 14492 AAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTA 14551 | | ||||||||| ||||| ||||| || || || |||||||| || || || || | | Sbjct 1181 AGGGAATACATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGA 1122 Query 14552 GCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14611 || || | || | ||||| || | | ||||| || ||| | || || ||| Sbjct 1121 GCCTCAGGAATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCA 1062 Query 14612 TCACTAGCTGCAAAAAATGCCAA 14634 ||| || ||||| || ||||| Sbjct 1061 TCAGAGGCAGCAAAGAAGGCCAA 1039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481753231368640