Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq95719 96.9 3e-15 seq87590 96.9 3e-15 seq97888 93.3 4e-14 >seq95719 Length=2412 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| || || || || ||||| || || || | || || || |||| Sbjct 1165 ATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATCACTTTGGAGGTGGA---GAGC 1109 Query 24892 ---GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 |||||| | || | || ||| | || || | || |||||| | || |||| Sbjct 1108 TCTGACAGTATTGAGAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCNCCTGAC 1049 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||||||||||| || | ||| ||||| ||||| |||||| ||| || || ||| Sbjct 1048 CAGCAACGTTTGATCTTTGCAGGCAAGCAACTTGAAGATGGTCGTACTCTGGCAGACTAC 989 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 | ||| ||||| ||| |||| || || | ||| | |||||||| ||||| Sbjct 988 AACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGATTGCGTGGAGG 939 >seq87590 Length=1330 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 24834 GCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC-- 24891 |||||| ||||| || || || || ||||| || || || | || || || |||| Sbjct 1330 GCAGATCTTTGTGAAGACATTGACTGGCAAGACCATTACTTTGGAGGTGGA---GAGCTC 1274 Query 24892 -GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||||| | || | || ||| | || || | || |||||| | ||| |||||| Sbjct 1273 TGACAGTATTGAGAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCGCCTGACCA 1214 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||||||||| || | ||| ||||| ||||| |||||| ||| || || |||| Sbjct 1213 GCAACGTTTGATCTTTGCAGGCAAGCAACTTGAAGATGGTCGTACTCTGGCAGACTACAA 1154 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||| ||| |||| || || | ||| | |||||||| ||||| Sbjct 1153 CATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGATTGCGTGGAGG 1106 >seq97888 Length=8055 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| || || || ||| | || || ||||| || ||| | || |||||||| Sbjct 2212 CATGCAGATTTTCGTAAAGACCCTCACTGGAAAAACCATTACCCTTGAGGTCGAATCCTC 2271 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||||| | || | ||| ||| | || || | || || ||| | || |||||| Sbjct 2272 TGACAGCATCGAGAATGTGAAGCAGAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCA 2331 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||||||||| || | ||| ||||| || || || ||| || || ||| |||| Sbjct 2332 GCAACGTTTGATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGTACCTTGGCCGACTACAA 2391 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCA 25061 ||| || || ||| | || |||||| | ||| | ||||||| ||||| || Sbjct 2392 CATCCAAAAGGAGTCTACTCTTCATCTGGTGCTCAGATTGCGAGGAGGACA 2442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417803123836160