Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq97584 89.7 1e-12 >seq97584 Length=40438 Score = 89.7 bits (98), Expect = 1e-12 Identities = 173/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 94791 TCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAAT 94850 |||||| || |||| || || | || || ||||| || || || || || || || Sbjct 29658 TCCTCCGGCGCTCTTAGAAATCAAGGCGCACTGTTTAAGCGTGTCGTATATCCCTTCTAT 29717 Query 94851 GCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGT-GTGACTGTTCCAC 94909 ||| || ||||| | | | ||||||||||| |||||||| ||| ||| | || ||| Sbjct 29718 GCTGTCTTCTTGCATGTTAACGAGGAAGCACGAAGAAAGTTGTGGTCGTGGC-GTGCCAG 29776 Query 94910 AATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTT 94969 ||| || |||||||| | ||||| || || | || || || |||| ||| || | Sbjct 29777 CATTGAAAAGTGTGGGAGTGGCATGAGTGAATAATTGTTGAGAGATAAGATTATACGTCT 29836 Query 94970 CAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCT 95029 | | |||| | ||||||| | ||| | || ||||| || ||||| | ||||| | Sbjct 29837 CCAATACAGCTCTGATGTCAGTCTTGTGCAGTCCTACAGCAACTCGCATCAACATGTGTT 29896 Query 95030 GAGGGCGCTCAAC 95042 | || | ||| || Sbjct 29897 GGGGCCTCTCCAC 29909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988338309186840