Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq96149 250 3e-61 seq97584 197 2e-45 seq86817 84.2 3e-11 >seq96149 Length=6040 Score = 250 bits (276), Expect = 3e-61 Identities = 415/600 (69%), Gaps = 6/600 (1%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || ||||| || || ||||| ||||| || || || || || || ||| Sbjct 1473 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAG 1414 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| ||||| | ||| || |||||||| |||||| ||| ||| || ||||| Sbjct 1413 GCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAA 1354 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA----- 33755 ||| ||||| || || || || |||| | |||||| || | | || || Sbjct 1353 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 1294 Query 33756 -TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 | ||||| || |||||||||| || ||||| || ||| |||||| || || ||||| Sbjct 1293 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 1234 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 ||| ||||||| | || || || || || || || |||||||| || ||| Sbjct 1233 ATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATA 1174 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 ||||||||| |||||||| |||||||| |||||||| |||||||| || | |||||| | Sbjct 1173 CATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1114 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 |||||| | ||||| || || | || || || ||| |||| || |||||| ||| Sbjct 1113 AATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGGC 1054 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 34054 ||||| || ||||| ||| || || || | | || || | || || |||| Sbjct 1053 AGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCA 994 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 || ||| ||| || | || || ||||| ||||||| || || ||||| ||||| Sbjct 993 ATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCTT 934 Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 ||| ||||| | ||| ||| || || |||| || || | ||||| | |||||||| Sbjct 933 TTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAGCGGTTTGGATT 874 >seq97584 Length=40438 Score = 197 bits (218), Expect = 2e-45 Identities = 442/656 (67%), Gaps = 6/656 (1%) Strand=Plus/Plus Query 63228 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 63287 |||| ||||| | || ||||| ||||| | ||| ||||| | ||| || ||||| Sbjct 29335 TCATTGGGACAAAACAGTGACCAGTCTCCTCCTGCCTCCACTCTCTCCATGAACAGATCG 29394 Query 63288 GGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTT 63347 || | ||| ||||| || |||||||| | || || || || || || |||||| Sbjct 29395 GGTACCCACAGAGCATGGAAGAGATCTCTGGCTCGCTGCTCTTCCTTGCCGTGGTTCTTT 29454 Query 63348 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 63407 || || || | ||| | | || || | ||||| || |||| || || || | || Sbjct 29455 TTCAGCTCCAAAAACTCAAAGATGTCCGCGTGCCAAGGCTCCAGATAGATTGCGAATGCT 29514 Query 63408 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63467 || || ||| || || ||||||| ||| | || |||| ||| || |||| || | Sbjct 29515 CCCTTCCTCTTGCCACCACCTTGATCTACGTAGCGTGCTGTGTCATTGTACACTCGCAGC 29574 Query 63468 ATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA-GCCTCCACTGGCACG 63526 |||||||| | |||||| || | || ||||| || ||| || | | | | |||| Sbjct 29575 ATTGGAATGAGACCGTTGGACGTGCCGTTGGTGCCCCTGATGTACGAGTTGGCAG-CACG 29633 Query 63527 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63586 ||| || | ||||| ||||| || || | ||||| || || ||||| |||| Sbjct 29634 AATTTTGTGCACACTAAGACCAATTCCTCCGGCGCTCTTAGAAATCAAGGCGCACTGTTT 29693 Query 63587 TAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGA 63646 | |||||| || || ||||||||||| || || |||||||| || || || ||| Sbjct 29694 AAGCGTGTCGTATATCCCTTCTATGCTGTCTTCTTGCATGTTAACGAGGAAGCACGAAGA 29753 Query 63647 CATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 63706 | ||| | || | || || ||||| || | || |||| || || || || ||| Sbjct 29754 AAGTTGTGGTCGTGGCGTGCCAGCATTGAAAAGTGTGGGAGTGGCATGAGTGAATAATTG 29813 Query 63707 TTCAGAAAGTAGATTGTACGTCT-CAATAGCTGAGTCT-ATATCCCATTGATGAATTCCT 63764 || ||| | ||||| ||||||| ||||| | | ||| || || | || | |||| Sbjct 29814 TTGAGAGATAAGATTATACGTCTCCAATA-CAG-CTCTGATGTCAGTCTTGTGCAGTCCT 29871 Query 63765 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAAC 63824 || || || ||||| |||||||| || || || || |||||| || ||| | ||| || Sbjct 29872 ACAGCAACTCGCATCAACATGTGTTGGGGCCTCTCCACAATTGTGCCGTTCAATTTGAAG 29931 Query 63825 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 | || || |||||| || || || |||||||| ||| | | ||||||| ||| Sbjct 29932 AGATAAGAGCGTTCCAATGTCTTGAAGCCAAAATAATTGAAAAAGAAGTCTCTTTC 29987 >seq86817 Length=155676 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 33594 CAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGG 33653 ||||| || ||||| ||||| || || ||||| || | ||||| || ||||| | | Sbjct 53894 CAGTGGAGGCCCTCATCTCTGGCGATAAACTCGTTGGAGAGGGTGAGGCCAGGCATGATG 53953 Query 33654 CCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACT 33713 || ||||| || | |||| | |||| | ||| ||| ||||||||||| || || || Sbjct 53954 CCTCGCTTCTTGATCCAATAAATGGCACAGAAGCTTCCAGAAAAGAAGATGCCCTCGACG 54013 Query 33714 GCAGCAAAGGC 33724 ||||||||||| Sbjct 54014 GCAGCAAAGGC 54024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629044121005440