Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq96149 253 3e-62 >seq96149 Length=6040 Score = 253 bits (280), Expect = 3e-62 Identities = 416/600 (69%), Gaps = 6/600 (1%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || || ||||| || || ||||| ||||| || || | || ||| || ||| Sbjct 1473 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAG 1414 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || ||||| ||||| | ||| || |||||||| ||||| || ||||| ||||| Sbjct 1413 GCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAA 1354 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCA----- 50133 ||| ||||| || ||||| || ||||| | |||||| || || | || || Sbjct 1353 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 1294 Query 50134 -TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 | ||||| || |||||||||| || ||||| || ||| |||||| || || ||||| Sbjct 1293 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 1234 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||| ||||||| | || || || || || || || |||||||| || ||| Sbjct 1233 ATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATA 1174 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||||||||| |||||||| |||||||| |||||||| |||||||| || | |||||| | Sbjct 1173 CATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1114 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 |||||| | ||||| || || |||| || || ||| |||| || || ||| ||| Sbjct 1113 AATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGGC 1054 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCA 50432 ||||| || ||||| ||| || || || || | || | | || || |||| Sbjct 1053 AGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCA 994 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 || ||| ||| || | || || ||||| ||||||| || || ||||| ||||| Sbjct 993 ATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCTT 934 Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 ||| ||||| | ||| ||| || || |||| || || | ||||| | |||||||| Sbjct 933 TTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAGCGGTTTGGATT 874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717386694086720