Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01-
07] 98,248 sequences; 83,432,518 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq98102 89.7 4e-13
seq96095 84.2 2e-11
>seq98102
Length=5793
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|||||||||| ||| | ||||| ||| | ||| |||||| || | ||||| || | |
Sbjct 5044 CCTCCACGCAATCTGAGCACCAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 4985
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
|| ||||| | || || | || ||||| ||||| || | ||||||||||| | ||
Sbjct 4984 AAGGTACGACCATCCTCAAGCTGCTTGCCTGCAAAGATGAGGCGCTGTTGATCTGGTGGG 4925
Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| ||||| || || ||| || || ||||| | ||| | ||| | ||| ||
Sbjct 4924 ATGCCTTCCTTGTC-CTGAATTTTCTGCTTGACGTTCTCAATAGAGTCAGAGGACTCCAC 4866
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| | || || || |||||||| || || ||||| ||||| |||||
Sbjct 4865 TTCAAGGGTGATGGTCTTTCCGGTGAGCGTCTTCACGAAAATCTGCAT 4818
>seq96095
Length=8987
Score = 84.2 bits (92), Expect = 2e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
||||||||||| ||| ||||||||| | |||||| |||| ||| || || |||| ||
Sbjct 7589 CACCAAATGGAGAGTAGACTCCTTTTGGATATTGTAGTCGGCCAAGGTGCGGCCGTCCTC 7530
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATC 42995
||| || ||||| ||||| |||| ||||| |||||
Sbjct 7529 CAACTGCTTGCCTGCAAAGATCAGGCGCTGCTGATC 7494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380912948994384
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |