Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq96149 187 4e-42 seq97584 125 1e-23 seq86817 120 4e-22 >seq96149 Length=6040 Score = 187 bits (206), Expect = 4e-42 Identities = 581/885 (66%), Gaps = 27/885 (3%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 |||||||||||| | || || ||||||||| ||||||||||||||| |||||||||| Sbjct 892 CTGTTTCCCATCCGTTACCAACGCATTTGGGAGATGTACAAAAAGGCTGAGGCCTCCTTC 951 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | |||||||||||| ||| | || | || ||||| ||| | || Sbjct 952 TGGACAGCCGAAGAGGTCGACCTGGCTTCCGATCACAACCATTGGAGCTCTCTTACTTCT 1011 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || |||| | | || || | | |||||||||||||| | ||| ||||| || Sbjct 1012 GA---TGAGAGGCACTTCATTAAGTCTGTGTTGGCCTTCTTTGCTGCCTCTGATGGCATT 1068 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TG 125233 || | || || || || ||| |||| | ||||| |||| ||| || Sbjct 1069 GTGACTGAGAACTTGGCTGGGCGCTTCATGACAGAGATTCAGATTCCTGAGGC-TCGCTG 1127 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| || || || ||||||||| | |||||||||||||| || |||| Sbjct 1128 CTTCTACGGCTTTCAGATTGCCATTGAGAACATTCACTCGGAAATGTATTCCCTCTTGAT 1187 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACA--CATGCTCTTTAACGCAATCGACACG 125351 |||| ||| | || || | || || ||| ||||| || || ||||| || Sbjct 1188 CGACACCTACGTGAAGGA-CCACGTCGAGAAGGATCAT-CTCTTCAATGCCATCGATACT 1245 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGAC---GACAAG 125408 ||||| ||| | || || ||| | |||| | ||||| || | | || Sbjct 1246 GTGCCTTCTGTCAAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAAAAGAGTGGCACT 1305 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 | | | | || ||| |||| |||||||||||||| || ||||||||||| || || Sbjct 1306 GACACTTTCCCTGAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGA 1365 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 || || |||||||||||||||||||| | || |||||||| || || ||| Sbjct 1366 AGCTTCTGTTCCATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGGCCTCTGCTTCAGC 1425 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588 || ||||| || |||| |||||||| || || ||||||||| ||| |||| || Sbjct 1426 AATGAGTTGATCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCCTGTCTCCTGTACAGC 1485 Query 125589 AACTATCTGCGTC--CCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCG 125646 || |||| ||| || |||| ||| | | || | || | | | Sbjct 1486 ----ATGCTCGTCAACCG---GC-CTTCCA---CTGACATGCCCACACAAATCATCAAGG 1534 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706 | || ||| ||| ||| | || ||| | | || || || || || || | ||||| | Sbjct 1535 AGGCTGTGGAGATTGAAAAGGAATTTGTCTCTGAGTCGCTTCCTGTTGGCCTCATTGGAA 1594 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT-GTACGAG 125765 ||||| | ||| ||||| | ||||| || ||||||||||| | || || || Sbjct 1595 TGAACGCCGCGCTCATGTGTCAATACATTGAATTTGTGGCAGACAGACTTCTCGTCGCTC 1654 Query 125766 TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825 ||| | || |||| | |||||| | || ||||| || ||| | || || Sbjct 1655 TTGGAT-GCTCCAAGGTCTACAACACGGCCAACCCCTTCCCTTGGATGGAAATGATTTCG 1713 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || |||| |||||||| || || |||| |||||| |||||||| Sbjct 1714 CTGCAGGGCAAGACCAATTTCTTTGAGAGGAAGGTGGGCGAGTAC 1758 >seq97584 Length=40438 Score = 125 bits (138), Expect = 1e-23 Identities = 336/510 (66%), Gaps = 8/510 (2%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||| ||| || || | |||||||| || ||||||||| | |||| Sbjct 29606 ACCAACGGCACGTCCAACGGTCTCATTCCAATGCTGCGAGTGTACAATGACACAGCACGC 29547 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| || || || || || || || | || |||| |||| |||||| Sbjct 29546 TACGTAGATCAAGGTGGTGGCAAGAGGAAGGGAGCATTCGCAATCTATCTGGAGCCTTGG 29487 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||||||| | ||||| ||| | ||| || || ||| ||| |||||| ||| Sbjct 29486 CACGCGGACATCTTTGAGTTTTTGGAGCTGAAAAAGAACCACGGCAAGGAAGAGCAGCGA 29427 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 ||||| || | || |||| || ||||| || ||| |||||||| || | || | | Sbjct 29426 GCCAGAGATCTCTTCCATGCTCTGTGGGTACCCGATCTGTTCATGGAGAGAGTGGAGGCA 29367 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 || || ||||| || | || ||| | | |||| ||||| || ||||| Sbjct 29366 GGAGGAGACTGGTCACTGTTTTGTCCCAATGAGGCACCAGGTCTTCAAGACAAATGGGGA 29307 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG---A 97163 | || ||||||| |||||| ||| |||| |||||||| | ||||| Sbjct 29306 GCTGAATTTGAGGAGCTGTACACACGCTATGAGCGCGAGGGCCG---TGCAAGACGTGCT 29250 Query 97164 GTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 || | || | ||| || ||| |||||| || || || ||||||| || || || Sbjct 29249 GTTAAGGCTCAAGAGCTTTGGTTTGCCATCTTGGAAGCCCAAATAGAGACCGGTACCCCT 29190 Query 97224 TACATTCTCTACAAGGATACCGTGAATCGC-AACAGCAACCAACGCCACTTGGGCACCAT 97282 || || |||||||||||| | || | ||| || |||||| | ||| | |||||||| Sbjct 29189 TATATGCTCTACAAGGAT-CACTGCAACGCGAAATCCAACCACCAGCACCTCGGCACCAT 29131 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGT 97312 | | ||||| || ||||| |||||||| Sbjct 29130 TCAATGTTCCAACCTTTGCACTGAAATTGT 29101 >seq86817 Length=155676 Score = 120 bits (132), Expect = 4e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 |||||||| || || ||||| ||||||||||||||||| || || || ||||| | | Sbjct 54030 CTGGTGGCCTTTGCTGCCGTCGAGGGCATCTTCTTTTCTGGAAGCTTCTGTGCCATTTAT 53971 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||| |||||||||| || ||||||| || || || | | ||||||||||| | || Sbjct 53970 TGGATCAAGAAGCGAGGCATCATGCCTGGCCTCACCCTCTCCAACGAGTTTATCGCCAGA 53911 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCAT 125575 || |||||||| |||||| | |||||||| Sbjct 53910 GATGAGGGCCTCCACTGTAAATTTGCCAT 53882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740149105196480