Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq97583 86.0 4e-12 seq85724 86.0 4e-12 seq95571 84.2 2e-11 seq96095 82.4 5e-11 >seq97583 Length=3224 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||| | | ||||| || || ||| ||| || || || || || || Sbjct 3218 CCTCCTCTCAGGCGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGCC 3159 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || || | || |||| || || || || || ||||| |||||||| || | || Sbjct 3158 AGAGTGCGGC-CGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGTGG 3100 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| ||||| ||| ||| || || ||||| | ||| || ||| | | ||| || Sbjct 3099 AATACCCTCTTTGTCTTGAATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCTAC 3040 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | ||||| ||||| || || || ||||||||||| || |||||| Sbjct 3039 CTCAAGGGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCATG 2991 >seq85724 Length=578 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||| | | ||||| || || ||| ||| || || || || || || Sbjct 7 CCTCCTCTCAGGCGCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGCC 66 Query 43955 A-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || || | || |||| || || || || || ||||| |||||||| || | || Sbjct 67 AGAGTGCGGC-CGTCCTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGATCAGGTGG 125 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| ||||| ||| ||| || || ||||| | ||| || ||| | | ||| || Sbjct 126 AATACCCTCTTTGTCTTGAATCTTCTGCTTGACGTTCTCAATAGAATCAGAGGACTCTAC 185 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | ||||| ||||| || || || ||||||||||| || |||||| Sbjct 186 CTCAAGGGTAATGGTTTTGCCAGTCAATGTCTTCACAAAGATCTGCATG 234 >seq95571 Length=1702 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || ||| ||||||||||| || ||| || ||| |||| || Sbjct 89 ACCAAATGGAGAGTAGACTCCTTTTGAATATTGTAGTCGGCCAAGGTACGACCATCCTCA 148 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | || || ||||| || || | || || ||||| |||| | || || || || Sbjct 149 AGCTGCTTGCCTGCGAAGATGAGGCGCTGTTGGTCAGGAGGGATGCCCTCCTTGTCCTGG 208 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||||| || | ||| | ||| | | |||||| |||| ||||| ||||| Sbjct 209 ATCTTCTGTTTCACATTCTCAATGGAATCAGAGGACTCCACTTCGAGGGTAATAGTTTTG 268 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATGT 44123 ||||| | |||||| || || || ||||||| Sbjct 269 CCGGTCAGAGTCTTTACGAAGATCTGCATGT 299 >seq96095 Length=8987 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTT 43953 || ||||||| | | |||||| || || ||| ||| || || || || || || | Sbjct 6213 CCGCCTCTCAGGCGAAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCC 6154 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || || | || |||| ||||| |||||||| |||| ||||||||||| |||| Sbjct 6153 AAAGTGCGGC-CGTCCTCCAGCTGTTTACCTGCAAAGATCAGACGTTGCTGGTCAGGAGG 6095 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || || || || || || || || || | ||| || ||| | |||||| Sbjct 6094 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCAATAGAATCAGAGCTCTCCAC 6035 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | ||||| || || || || || |||||||| || ||||||||| Sbjct 6034 TTCAAGGGTAATAGTCTTGCCAGTCAATGTCTTCACGAAGATTTGCATG 5986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354352790188704