Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq96149 250 3e-61 seq86817 87.8 2e-12 >seq96149 Length=6040 Score = 250 bits (276), Expect = 3e-61 Identities = 415/600 (69%), Gaps = 6/600 (1%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || || ||||| || || ||||| ||||| || || | || ||| || ||| Sbjct 1473 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAG 1414 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| ||||| | ||| || |||||||| |||||| ||| |||||| ||||| Sbjct 1413 GCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAA 1354 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA----- 33477 ||| ||||| || || || || |||| | |||||| || | | || || Sbjct 1353 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 1294 Query 33478 -TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 | ||||| || |||||||||| || ||||| || ||| |||||| || || ||||| Sbjct 1293 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 1234 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 ||| ||||||| | || || || || || || || |||||||| || ||| Sbjct 1233 ATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATA 1174 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 ||||||||| |||||||| |||||||| |||||||| |||||||| || | |||||| | Sbjct 1173 CATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1114 Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716 |||||| | ||||| || || | ||||| || ||| |||| || || ||| ||| Sbjct 1113 AATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGGC 1054 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33776 ||||| || ||||| ||| || || || | | || || | || || |||| Sbjct 1053 AGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCA 994 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 || ||| ||| || | || || ||||| ||||||| || || ||||| ||||| Sbjct 993 ATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCTT 934 Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 ||| ||||| | ||| ||| | || |||| || || | ||||| | |||||||| Sbjct 933 TTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAGCGGTTTGGATT 874 >seq86817 Length=155676 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 33316 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 33375 ||||| || ||||| ||||| || | |||||||| | ||||| || ||||| | | Sbjct 53894 CAGTGGAGGCCCTCATCTCTGGCGATAAACTCGTTGGAGAGGGTGAGGCCAGGCATGATG 53953 Query 33376 CCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACT 33435 || ||||| || | |||| | |||| | ||| ||||||||||||||| || || || Sbjct 53954 CCTCGCTTCTTGATCCAATAAATGGCACAGAAGCTTCCAGAAAAGAAGATGCCCTCGACG 54013 Query 33436 GCAGCAAAGGC 33446 ||||||||||| Sbjct 54014 GCAGCAAAGGC 54024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622182158543680