Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq96154 131 2e-25 seq91747 131 2e-25 seq97583 104 2e-17 seq96095 96.9 3e-15 seq97888 95.1 1e-14 seq97451 89.7 5e-13 >seq96154 Length=12494 Score = 131 bits (144), Expect = 2e-25 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | |||||||| ||||| ||||| || | |||||| | || |||| || Sbjct 11924 ATGCAGATCTTTGTAAAGACATTGACTGGTAAGACCATCACCTTGGAGGTAGAGTCCTCT 11865 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || ||| | || || ||||||||| ||||| || || || || ||||| || Sbjct 11864 GACTCTATTGAGAACGTGAAGCAAAAGATTCAAGACAAGGAGGGCATCCCACCCGACCAG 11805 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-AC-GTCAGCGACTATA 26946 || | ||||| | || |||||| || ||||| || | | | | || | ||| |||||| Sbjct 11804 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACACTGGCAG--ACTATA 11747 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 |||||||||| || |||||| |||||||||| || ||||| | |||||| Sbjct 11746 ACATTCAAAAGGAGTCTACTCTCCATCTGGTACTCAGACTGCGTGGAGGA 11697 >seq91747 Length=1618 Score = 131 bits (144), Expect = 2e-25 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | |||||||| ||||| ||||| || | |||||| | || |||| || Sbjct 1231 ATGCAGATCTTTGTAAAGACATTGACTGGTAAGACCATCACCTTGGAGGTAGAGTCCTCT 1290 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || ||| | || || ||||||||| ||||| || || || || ||||| || Sbjct 1291 GACTCTATTGAGAACGTGAAGCAAAAGATTCAAGACAAGGAGGGCATCCCACCCGACCAG 1350 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-AC-GTCAGCGACTATA 26946 || | ||||| | || |||||| || ||||| || | | | | || | ||| |||||| Sbjct 1351 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACACTGGCAG--ACTATA 1408 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 |||||||||| || |||||| |||||||||| || ||||| | |||||| Sbjct 1409 ACATTCAAAAGGAGTCTACTCTCCATCTGGTACTCAGACTGCGTGGAGGA 1458 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 26763 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA 26822 |||| |||||| | || || || ||||| ||||| || | || ||| | ||| | || Sbjct 313 AACACAATGCAGATCTTCGTGAAGACATTGACTGGCAAGACCATTACCCTTGAAGTGGAG 372 Query 26823 TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC 26882 || || | ||||||| | || || ||||||||| ||||| || || || || || Sbjct 373 TCCTCTGATAGCATCGAGAACGTGAAGCAAAAGATTCAAGACAAGGAGGGCATTCCCCCT 432 Query 26883 GATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGAC 26942 || || || | | || | || ||||| || || || || | | | || |||| Sbjct 433 GACCAGCAGCGTTTGATCTTCGCAGGCAAGCAGCTGGAGGACGGGCGTACACTCGCCGAC 492 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| ||||| |||||||| | ||| |||| || | ||| ||||||| Sbjct 493 TATAACATCCAAAAGGAATCTACCCTTCATTTGGTGCTTCGCCTTCGAGGAGG 545 >seq97583 Length=3224 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || ||||| ||||| || | ||||| | ||| | || || Sbjct 2536 ATGCAGATCTTTGTGAAGACATTGACTGGCAAGACCATCACTTTGGAAGTCGAGTCCTCT 2595 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||| ||||||| | ||||| || ||||| ||||| ||||| || ||||||||||| Sbjct 2596 GACAGCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCCGATCAG 2655 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | | ||||| ||||| || |||| | | | | ||||| ||| Sbjct 2656 CAGCGGCTGATCTTTGCAGGCAAGCAACTTGAGGATGGCCGCACCTTGGCTGACTACAAC 2715 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || |||||||| || || |||| ||||| || | ||||| || || Sbjct 2716 ATCCAAAAAGAGTCCACCCTCCACCTGGTGCTTCGTCTTAGGGGTGG 2762 >seq96095 Length=8987 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || || ||||| |||||||| | ||||| | ||| | ||||| Sbjct 5758 AATGCAAATCTTCGTCAAGACATTGACTGGAAAGACCATCACTTTGGAAGTCGAATCCTC 5817 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| | |||||| | || || || ||||| || || ||||| || || || ||||| Sbjct 5818 TGACTCTATCGAGAACGTGAAGCAGAAGATCCAAGATAAGGAAGGCATCCCACCTGATCA 5877 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||||| | ||||| || ||||| || | | | || ||||| || Sbjct 5878 GCAGCGTCTCATTTTTGCAGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCTGACTACAA 5937 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||| ||||| || |||| ||||||| Sbjct 5938 CATTCAAAAGGAATCCACCCTCCACTTGGTCCT 5970 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| | ||||| || | ||||| | ||| | || || Sbjct 6683 ATGCAGATCTTTGTAAAAACTCTGACTGGCAAGACCATCACTTTGGAAGTGGAGTCTTCT 6742 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||| ||||||| | || ||||| |||||| ||||| || || || ||||| ||||| Sbjct 6743 GACAGCATCGAGAATGTGAAACAGAAGATTCAAGACAAGGAGGGCATCCCTCCTGATCAG 6802 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | | || ||||| || || || | | | || |||||| ||| Sbjct 6803 CAGCGTCTCATCTTTGCAGGTAAACAGCTTGAGGACGGCCGCACGCTCGCCGACTACAAC 6862 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || |||||| | || |||| || | ||||| || || Sbjct 6863 ATCCAAAAGGAGTCTACTCTTCACTTGGTGCTTCGCCTTAGGGGTGG 6909 >seq97888 Length=8055 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||| || | || ||| | ||| | || Sbjct 1529 ATGCAGATCTTTGTGAAGACGTTGACTGGCAAGACTATTACCCTTGAAGTGGAGAGCTCT 1588 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||| ||| ||| | ||||| || ||||| ||||| || || || || || || ||| Sbjct 1589 GACAGCATTGAGAACGTCAAGCAGAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAA 1648 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || || || |||||||| || | | | | | | |||||| || Sbjct 1649 CAGCGCCTCATCTTCGCTGGTAAGCAACTCGAGGACGGTCGTACCTTGGCCGACTACAAT 1708 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||| |||||| ||||| |||| || | ||||| || || Sbjct 1709 ATTCAAAAAGAGTCTACTCTCCATTTGGTGCTTCGCCTTAGGGGTGG 1755 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || || || ||||| || | |||||| | || | ||||| Sbjct 1984 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAATCCTC 2043 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || |||| ||| | || || |||||||| |||||||| || || || || ||||| Sbjct 2044 TGATTCCATTGAGAACGTAAAGCAAAAGATCCAGGACAAAGAGGGCATCCCCCCTGATCA 2103 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || ||||| || || || |||| | | | | ||| || || Sbjct 2104 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCTTGGCCGATTACAA 2163 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||| || |||||| | || |||| || | || || ||||| Sbjct 2164 CATTCAAAAGGAGTCTACTCTTCACTTGGTGCTTCGTCTCAGGGGAGG 2211 >seq97451 Length=8672 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| || ||||| || | |||||| | ||| | || || Sbjct 8344 ATGCAGATCTTTGTAAAAACTTTGACTGGCAAGACCATCACCTTGGAAGTGGAGTCCTCT 8285 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | |||||| | ||||| || |||||| ||||| ||||| || || || || || Sbjct 8284 GACTCTATCGAGAACGTCAAGCAGAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAG 8225 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | | ||| || || ||||| || | | | | | |||||| ||| Sbjct 8224 CAGCGTCTGATCTTTGCCGGTAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 8165 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || |||||| | || |||| || | || || ||||| Sbjct 8164 ATCCAGAAGGAGTCTACTCTTCACTTGGTGCTTCGCCTGAGGGGAGG 8118 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || || || || | |||||| ||||| | || || Sbjct 7591 ATGCAGATCTTCGTTAAGACCTTGACCGGCAAGACCATCACCCTCGAAGTTGAGTCTTCT 7532 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || | ||||||| | || || || ||||| ||||| || || || ||||||||||| Sbjct 7531 GATAGCATCGAGAATGTGAAGCAGAAGATACAGGACAAGGAGGGCATTCCTCCCGATCAG 7472 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | || | || || || || ||||| || | | | | | |||||| ||| Sbjct 7471 CAGCGTTTGATCTTCGCTGGTAAGCAGCTCGAGGACGGTCGTACTCTTGCCGACTACAAC 7412 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || |||||| ||||| |||| || | || || ||||| Sbjct 7411 ATCCAAAAGGAGTCTACTCTCCATTTGGTSCTTCGCCTGAGGGGAGG 7365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478074554706560