Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq97584 260 4e-64 seq96149 87.8 5e-12 >seq97584 Length=40438 Score = 260 bits (288), Expect = 4e-64 Identities = 1052/1642 (64%), Gaps = 54/1642 (3%) Strand=Plus/Minus Query 363545 TATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTT 363604 ||||||| || ||||| || ||| | | ||||||||| || | ||||| | |||| Sbjct 29809 TATTCACTCATGCCACTCCCACACTTTTCAATGCTGGCACGCCACGACCACAACTTTCTT 29750 Query 363605 CTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGA 363664 | ||||| || | || ||| | || || ||| || || || | ||||| ||||| Sbjct 29749 CGTGCTTCCTCGTTAACATGCAAGAAGACAGCATAGAAGGGATATACGACACGCTTAAAC 29690 Query 363665 ATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG 363724 | || || | ||||| |||| || || ||||||||| | | ||||| |||||| Sbjct 29689 AGTGCGCCTTGATTTCTAAGAGCGCCGGAGGAATTGGTCTTAGTGTGCACAAAATTCGTG 29630 Query 363725 CACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 | ||| ||||| | ||||| || || || || || |||| ||||| | Sbjct 29629 CTGCCAACTCGTACATCAGGGGCACCAACGGCACGTCCAACGGTCTCATTCCAATGCTGC 29570 Query 363785 GTGTGTTTGACAAT---ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGG 363841 | |||| ||||| || || | ||||| || || ||||| || ||| | || || | Sbjct 29569 GAGTGT---ACAATGACACAGCACGCTACGTAGATCAAGGTGGTGGCAAGAGGAAGGGAG 29513 Query 363842 CGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGA 363901 | || || || ||||| |||||| || || || || ||||||||| | ||||| || Sbjct 29512 CATTCGCAATCTATCTGGAGCCTTGGCACGCGGACATCTTTGAGTTTTTGGAGCT---GA 29456 Query 363902 AAAA----CACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGG 363955 |||| ||||| || ||||| | ||| || | ||||| ||| |||| || |||| Sbjct 29455 AAAAGAACCACGGCAAGGAAGAGCA---GCGAGCCAGAGATCTCTTCCATGCTCTGTGGG 29399 Query 363956 TTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGA-ATTGGTCACTCTTTTGCCCA 364014 | | || | || ||| || | ||||||||||| | || | |||||||| ||||| || Sbjct 29398 TACCCGATCTGTTCATGGAGAGAGTGGAGGCAGG-AGGAGACTGGTCACTGTTTTGTCCC 29340 Query 364015 CACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAG 364074 | || ||||||||| || |||||| | || | || | || ||| | Sbjct 29339 AATGAGGCACCAGGTCTTCAAGACAAATGGGGAGCTGAATTTGAGGAGCTGTACACACGC 29280 Query 364075 TATGAATCGGAGGGAAAGGCTCGTAAGA----CAATTCCCGCACAGAAGCTATGGTTTGC 364130 ||||| | | || | | | |||| | || || || |||| |||||||| Sbjct 29279 TATGA----GCGCGAGGGCCGTGCAAGACGTGCTGTTAAGGCTCAAGAGCTTTGGTTTGC 29224 Query 364131 CATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAA 364190 |||| |||| | || || ||||| || || || |||||| | ||||| ||| ||||| Sbjct 29223 CATCTTGGAAGCCCAAATAGAGACCGGTACCCCTTATATGCTCTACAAGGATCACTGCAA 29164 Query 364191 CCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGAT 364250 | || |||||||| |||||||| || || ||||| |||||| || || || || Sbjct 29163 CGCGAAATCCAACCACCAGCACCTCGGCACCATTCAATGTTCCAACCTTTGCACTGAAAT 29104 Query 364251 TATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 | | | | ||| | ||| | || ||||||||||| || || || || || || || Sbjct 29103 TGTCCAGTTCACATCACCCAAAGAAGTGGCCGTATGTAATCTCGCTTCAATGGCTCTGCC 29044 Query 364311 GGCGTTTGT--------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACC 364362 | ||| | || |||||| ||||| ||| || | || | ||| || | Sbjct 29043 TAAATATGTGGACAAAGAGAAAATGGTA--TTTGATCACGAGAAGCTCTTTGAGGTGGTC 28986 Query 364363 TATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAA 364422 | | || |||| | ||||||| || ||| || || || ||| || | ||| Sbjct 28985 AAGGTGGTCACGCGCAACTTGAACAAGGTAATAGACGTCAACTACTACCCAGTTGCAGAA 28926 Query 364423 GCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGAC 364482 ||||||| || || | ||||| | || ||||| ||||| |||||||| || |||||| Sbjct 28925 GCCGAGCACTCCAACAGACGTCACAGGCCTATTGGCCTTGGAGTACAGGGTCTTGCTGAC 28866 Query 364483 GTTT---TTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAG 364539 || | || | ||| | ||| | | || || || || | || || Sbjct 28865 GTCTTCCTTCTCTTGCGC---ATGCCTTGGGACAGCGAAGAGGCACGCGCCCTCAACCGC 28809 Query 364540 GAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAA-AAC 364598 || || || || ||||| ||||||||||| | || | || || ||||||| | Sbjct 28808 GACATTTTCGAGACAATCTATTTTGCCGCTCTCACATCATCCAACGAGCTGGCAAAGGAG 28749 Query 364599 CAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGA 364658 |||||| ||| | || | || || || || | || | | | |||||||| Sbjct 28748 CAAGGG-CCCTACCCCACATTTGCCGGCTCTCCAACGAGCAAAGGCATACTACAGTTTGA 28690 Query 364659 TCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTT-A 364717 | | |||||||| |||||| ||| ||| | |||| | || | | | || Sbjct 28689 TATGTGGAATGTTGAGCCATCCTCCCGTTGGGATTGGGCCTCCCTCAAGGCAAGCATTGT 28630 Query 364718 AGAAGCATGGTACTCGCAA---CTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTG 364774 |||| || ||| ||||| || || ||| || || ||||| |||||||||||| Sbjct 28629 AGAA-CACGGTCTGCGCAACAGCTTGCTGGTT---GCACCTATGCCGACGGCTTCTACTT 28574 Query 364775 CACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCC 364834 | ||||| || || ||||| |||||||| || || | || ||| | || || | | Sbjct 28573 CCCAGATACTAGGCAACAATGAGTGCTTTGAGCCTTACACTTCTAATATCTACACAAGGC 28514 Query 364835 GGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACC 364894 | | | | ||||| ||| |||| | || | || | ||| |||||| | | Sbjct 28513 GCATCTTGGCTGGAGACTTTACGGTGATCAACGAACACTTGCTCAGGGATCTGATGGCAC 28454 Query 364895 GCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGA 364954 || |||||| | | ||||||||| | | | || ||||| || ||||| Sbjct 28453 TGGGTCTGTGGAATCATGCAATGAAGAACAAGCTTGTTGCGCACAATGGATCCGTGCAAG 28394 Query 364955 ACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCA 365014 ||| | | ||| || || |||| | |||||||| || ||||| ||| | Sbjct 28393 CCATAGACGAGATCCCAAGCGAGCTCAAGCGCTTGTACAAAACAGTTTGGGAGATTCCTC 28334 Query 365015 TGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGT 365074 ||| | |||| | || ||||| || || || | || | ||| || |||||| Sbjct 28333 AGCGTATTCTCTTAGACATGGCAGCTGACCGAGCAGCGTACATCGACCAAAGCCAGAGCC 28274 Query 365075 TTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGT 365134 | ||||||| ||| | |||| | | ||||| || || || ||||| || |||| | Sbjct 28273 TAAACGTATATATGGCAGAGCCCTCATTCGCCAGACTCACGTCGATGCACTTTTACGCAT 28214 Query 365135 GGAAATCCGGTCTTAAGACAGG 365156 |||| || || ||||| || Sbjct 28213 GGAAGAAGGGCCTAAAGACTGG 28192 >seq96149 Length=6040 Score = 87.8 bits (96), Expect = 5e-12 Identities = 157/226 (69%), Gaps = 10/226 (4%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT----GAACGTTCA--TTCGCG 22488 ||||| || || |||||||| || |||||||| | || | || || ||| | Sbjct 1258 AAGAAGAAAGCTGATTGGGCTCTCAAATGGATTGAAAAGAGTGGCACTGACACTTTCCCT 1317 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 || | | ||||||| || | || |||||||| ||||| |||||| || ||| | Sbjct 1318 GAGAGATTGGTTGCATTCGCCGCCGTGGAAGGCATCTTCTTCTCTGGAAGCTTCTGTTCC 1377 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA--AATGAGTTAA 22606 ||||||||||| || || | | | ||||| || || | |||| |||||||| | Sbjct 1378 ATCTTTTGGCTCAAGAAGAGGGGCCTCATGCCTGGCCT--CTGCTTCAGCAATGAGTTGA 1435 Query 22607 TTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 | ||| |||||||||| |||||| ||| ||||| ||| | || || Sbjct 1436 TCAGCAGAGATGAGGGCCTTCATTGCGACTTTGCCTGTCTCCTGTA 1481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301712935229936