Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq97888 105 6e-18 seq93742 100 2e-16 seq85083 100 2e-16 seq84820 100 2e-16 seq96095 89.7 4e-13 seq96763 82.4 6e-11 seq96154 82.4 6e-11 seq91747 82.4 6e-11 seq86730 82.4 6e-11 >seq97888 Length=8055 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| || || || ||||| ||||||||||||||| | || || ||| Sbjct 2213 ATGCAGATTTTCGTAAAGACCCTCACTGGAAAAACCATTACCCTTGAGGTCGAATCCTCT 2272 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||| | | | || || || || || || || || ||| | || ||| ||| Sbjct 2273 GACAGCATCGAGAATGTGAAGCAGAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCAG 2332 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| ||||| || | || |||| ||| ||||||| || ||| Sbjct 2333 CAACGTTTGATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGTACCTTGGCCGACTACAAC 2392 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 || ||||| ||||||||| | ||| ||||| | ||||||||||||||| Sbjct 2393 ATCCAAAAGGAGTCTACTCTTCATCTGGTGCTCAGATTGCGAGGAGGA 2440 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || ||||| || || | || || || ||||| ||| | || || ||| Sbjct 1984 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTCGAATCCTC 2043 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || | ||| | ||||| ||||| || || ||||| ||| ||||| |||||| Sbjct 2044 TGATTCCATTGAGAACGTAAAGCAAAAGATCCAGGACAAAGAGGGCATCCCCCCTGATCA 2103 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | || || | || ||||| || | || |||| | ||| |||||||||| || Sbjct 2104 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCTTGGCCGATTACAA 2163 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||||||| ||||||||| | || ||||| Sbjct 2164 CATTCAAAAGGAGTCTACTCTTCACTTGGTG 2194 >seq93742 Length=2862 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || || || || || || |||||| | ||| ||||||| Sbjct 762 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACTATTACCCTTGAAGTGGAGTCCTCT 703 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | ||||| || || ||| || || |||||| | || ||||||| Sbjct 702 GATTCTATTGAGAACGTAAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAG 643 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | ||| ||||| || ||||||||| | ||| ||||||| || ||| Sbjct 642 CAGCGCCTGATCTTTGCAGGCAAGCAGCTAGAAGATGGCCGTACCTTGGCCGACTACAAC 583 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 || ||||||||||| || | || ||||| Sbjct 582 ATCCAAAAAGAGTCCACCCTTCACCTGGTG 553 >seq85083 Length=2832 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || || || || || || |||||| | ||| ||||||| Sbjct 732 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACTATTACCCTTGAAGTGGAGTCCTCT 673 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | ||||| || || ||| || || |||||| | || ||||||| Sbjct 672 GATTCTATTGAGAACGTAAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAG 613 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | ||| ||||| || ||||||||| | ||| ||||||| || ||| Sbjct 612 CAGCGCCTGATCTTTGCAGGCAAGCAGCTAGAAGATGGCCGTACCTTGGCCGACTACAAC 553 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 || ||||||||||| || | || ||||| Sbjct 552 ATCCAAAAAGAGTCCACCCTTCACCTGGTG 523 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| || || |||||||| ||||| || ||||| | || || ||| Sbjct 504 ATGCAGATTTTCGTGAAGACGCTCACTGGAAAGACTATTACACTTGAGGTCGAATCCTCT 445 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||| || ||| | || || || || || || || |||||| |||| ||||||| Sbjct 444 GACTCTATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCTGATCAG 385 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| ||||| || | || |||| | ||| |||||||||| ||| Sbjct 384 CAACGTTTGATCTTTGCAGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGATTACAAC 325 Query 115466 ATTCAAAAAGAGTCTAC 115482 |||||||| ||||| || Sbjct 324 ATTCAAAAGGAGTCCAC 308 >seq84820 Length=3640 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || || || || || || |||||| | ||| ||||||| Sbjct 3306 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACTATTACCCTTGAAGTGGAGTCCTCT 3365 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | ||||| || || ||| || || |||||| | || ||||||| Sbjct 3366 GATTCTATTGAGAACGTAAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAG 3425 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | ||| ||||| || ||||||||| | ||| ||||||| || ||| Sbjct 3426 CAGCGCCTGATCTTTGCAGGCAAGCAGCTAGAAGATGGCCGTACCTTGGCCGACTACAAC 3485 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 || ||||||||||| || | || ||||| Sbjct 3486 ATCCAAAAAGAGTCCACCCTTCACCTGGTG 3515 >seq96095 Length=8987 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| || || | || || || ||||| ||| | || ||||||| Sbjct 6455 ATGCAAATCTTTGTGAAGACATTGACTGGCAAGACCATCACCTTGGAGGTGGAGTCCTCT 6514 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||| || ||| | || || || || || || ||||| ||| |||| ||||||| Sbjct 6515 GACTCTATTGAGAACGTGAAGCAGAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 6574 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | ||| || || || | || |||| ||| ||||||| || ||| Sbjct 6575 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCTTGGCCGACTACAAC 6634 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||||||||||||| | || |||| | | ||| | ||||| Sbjct 6635 ATCCAAAAAGAGTCTACTCTCCACTTGGTCCTTCGCTTGAGGGGAGG 6681 >seq96763 Length=8027 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || | || || || ||||||||| | || |||| | Sbjct 1634 ATGCAGATCTTCGTGAAGACATTGACTGGCAAGACCATTACCCTTGAGGTGGAGAGCTCT 1693 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||| || ||| | || || || || || || || || ||| | || ||||||| Sbjct 1694 GACTCTATTGAGAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCTCCTGATCAG 1753 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | | || | ||| || || || | || |||| | ||| |||| || || ||| Sbjct 1754 CAGCGTTTGATCTTTGCAGGAAAGCAGCTCGAGGATGGCCGTACCTTGGCTGACTACAAC 1813 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 || ||||| ||||||||| | ||| ||||| | |||||||||||||| Sbjct 1814 ATCCAAAAGGAGTCTACTCTTCATCTGGTGCTCCGATTGCGAGGAGGA 1861 >seq96154 Length=12494 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || | || || || ||||| ||| | || |||||| Sbjct 11924 ATGCAGATCTTTGTAAAGACATTGACTGGTAAGACCATCACCTTGGAGGTAGAGTCCTCT 11865 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||| || ||| | || || ||||| ||| || || || ||| |||| || ||| Sbjct 11864 GACTCTATTGAGAACGTGAAGCAAAAGATTCAAGACAAGGAGGGCATCCCACCCGACCAG 11805 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | || ||||| || | || || | || |||| || |||||| Sbjct 11804 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACACTGGCAGACTATAAC 11745 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 |||||||| ||||||||| | ||| |||| | ||| |||| |||||| Sbjct 11744 ATTCAAAAGGAGTCTACTCTCCATCTGGTACTCAGACTGCGTGGAGGA 11697 >seq91747 Length=1618 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || | || || || ||||| ||| | || |||||| Sbjct 1231 ATGCAGATCTTTGTAAAGACATTGACTGGTAAGACCATCACCTTGGAGGTAGAGTCCTCT 1290 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||| || ||| | || || ||||| ||| || || || ||| |||| || ||| Sbjct 1291 GACTCTATTGAGAACGTGAAGCAAAAGATTCAAGACAAGGAGGGCATCCCACCCGACCAG 1350 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | || || | || ||||| || | || || | || |||| || |||||| Sbjct 1351 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACACTGGCAGACTATAAC 1410 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 |||||||| ||||||||| | ||| |||| | ||| |||| |||||| Sbjct 1411 ATTCAAAAGGAGTCTACTCTCCATCTGGTACTCAGACTGCGTGGAGGA 1458 >seq86730 Length=750 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 ||| |||||| | | || | ||| ||||| || | || |||| ||| ||||||| Sbjct 85 TGACCAGCAACGTTTGATCTTTGCAGGCAAGCAGCTCGAGGATGGTCGTACCTTGGCCGA 144 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 || ||||| ||||| ||||||||| | ||| ||||| | ||||||||||||||| Sbjct 145 CTACAACATCCAAAAGGAGTCTACTCTTCATCTGGTGCTCAGATTGCGAGGAGGA 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424834694157760