Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq96149 232 8e-56 >seq96149 Length=6040 Score = 232 bits (256), Expect = 8e-56 Identities = 411/600 (69%), Gaps = 6/600 (1%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| || || ||||| || || ||||| ||||| || || || || ||| || ||| Sbjct 1473 ACAGGCAAAGTCGCAATGAAGGCCCTCATCTCTGCTGATCAACTCATTGCTGAAGCAGAG 1414 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779 || ||||| ||||| | ||| || |||||||| ||||| || |||||| ||||| Sbjct 1413 GCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTTCCAGAGAAGAA 1354 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA----- 32834 || ||||| || || || || |||| | |||||| || | | || || Sbjct 1353 GATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCAGTGCCACTCTT 1294 Query 32835 -TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 | ||||| || |||||||||| || ||||| || ||| |||||| || || || || Sbjct 1293 TTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACAGTATCGATGGC 1234 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 ||| ||||||| | || || || || || || || || ||||| || ||| Sbjct 1233 ATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATCAAGAGGGAATA 1174 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 ||||||||| |||||||| |||||||| || ||||| ||||||||||| | |||||| | Sbjct 1173 CATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAGCGAGCCTCAGG 1114 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 |||||| | ||||| || || | || || || ||| |||| || || ||| ||| Sbjct 1113 AATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATGCCATCAGAGGC 1054 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33133 ||||| || ||||| ||| || || || | | || || | || || |||| Sbjct 1053 AGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTAAGAGAGCTCCA 994 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193 || ||| ||| || | || || ||||| ||||||| || || ||||| ||||| Sbjct 993 ATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAGGCCTCAGCCTT 934 Query 33194 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 33253 ||| ||||| | ||| ||| || || | || ||||| | ||||| | |||||||| Sbjct 933 TTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAGCGGTTTGGATT 874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632853836540800