Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq96149 192 7e-44 >seq96149 Length=6040 Score = 192 bits (212), Expect = 7e-44 Identities = 413/614 (67%), Gaps = 5/614 (1%) Strand=Plus/Minus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTG 93139 |||||| | || ||||||||| ||| | || || |||| || | |||||||||||| Sbjct 1483 TGTACAGGAGACAGGCAAAGTCGCAATGAAGGCCCTCATCTC-TGCTGATCAACTCATTG 1425 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 ||||| | || || | || || | |||||||||||||| || ||| || || Sbjct 1424 CTGAAGCAGAGGCCAGGCATGAGGCCCCTCTTCTTGAGCCAAAAGATGGAACAGAAGCTT 1365 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 ||||| || || || ||||||||||| || ||||| || | | || | ||| | | Sbjct 1364 CCAGAGAAGAAGATGCCTTCCACGGCGGCGAATGCAACCAATCTCTCAGGGAAAGTGTCA 1305 Query 93260 GAATTACTGCTG---ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT 93316 | ||| | |||||||| | ||||||||| ||||| ||||| | | |||| | Sbjct 1304 GTGCCACTCTTTTCAATCCATTTGAGAGCCCAATCAGCTTTCTTCTTGACAGAAGGCACA 1245 Query 93317 GTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376 || ||||| || || || || | ||| |||| | || | ||| || ||||| Sbjct 1244 GTATCGATGGCATTGAAGAGATGATCCTTCTCGACGTGGTCCTTCACGTAGGTGTCGATC 1185 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 || || ||||||||||| || || | ||||| || ||||| || || |||||||| || Sbjct 1184 AAGAGGGAATACATTTCCGAGTGAATGTTCTCAATGGCAATCTGAAAGCCGTAGAAGCAG 1125 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496 | ||| || | ||||| | ||| || | | | | | || ||| | || || Sbjct 1124 CGAGCCTCAGGAATCTGAATCTCTGTCATGAAGCGCCCAGCCAAGTTCTCAGTCACAATG 1065 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTA 93556 ||||| || || ||||| || ||||| | | ||| || || || |||||||| || Sbjct 1064 CCATCAGAGGCAGCAAAGAAGGCCAACACAGACTTAATGAAGTGCCTCTCATCAGAAGTA 1005 Query 93557 AGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 || ||||| | |||| | || ||||| |||||| | ||||| || || Sbjct 1004 AGAGAGCTCCAATGGTTGTGATCGGAAGCCAGGTCGACCTCTTCGGCTGTCCAGAAGGAG 945 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAA 93676 || || || ||||||||||| ||||| ||| ||| || | || ||||| | ||||| Sbjct 944 GCCTCAGCCTTTTTGTACATCTCCCAAATGCGTTGGTAACGGATGGGAAACAGCACAAAG 885 Query 93677 CGATTAGGGTTATC 93690 || || || || || Sbjct 884 CGGTTTGGATTCTC 871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556176919251520